Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0217 ATGAGGGTAACTAGTGAACGAAAAGTTGAGGATAAACAAATAGAAGACTTTACACTATTTGCTTTCATGTCTCCTTCACCAAGTGACTCCAAATCCCCTGTGAGAGGCTATCGATCACGGTCAAGATCATTACCTAGGTCTAGGAGGAGTCGCTCCAGGAGTGAAGATTCTATAGATGCATCGAATCCTGGAAATAATTTGTATGTAACAGGATTGTCCACTAGGGTCACTAACAGTGATCTTGAAAATTATTTCGGCAAAGAAGGAAAGGTTGTTGATTGCCACCTGGTTACTGATCCTCGCTCCAAAGAGTCCCGTGGGTTTGGTTTTGTCACTATGGAAACTAATGAGGATGCTGACCGATGTATCAAGTACCTGAATCGCTCTGTTTTTGAAGGTCGATTAATAACTGTTGAAAAGGCAAAGAGAAAACGTGGCAGGACTCCAACTCCGGGCAGATACTATGGTTTGAGAGATAGGCGAGGACGTGGATGGAGACGGTCCCGTAGTCACTCACCTAGGCGTTGGCACGACAGAGATGATTATTCAAGGGACCGACGAGGAAGATCTCGTTCTCCTTACAGTAGGAGGCGAAGGGAACGCTCGTTGTCAGCTGGCGATAGTCGCCATCCACGATGA 639 0.4601 MRVTSERKVEDKQIEDFTLFAFMSPSPSDSKSPVRGYRSRSRSLPRSRRSRSRSEDSIDASNPGNNLYVTGLSTRVTNSDLENYFGKEGKVVDCHLVTDPRSKESRGFGFVTMETNEDADRCIKYLNRSVFEGRLITVEKAKRKRGRTPTPGRYYGLRDRRGRGWRRSRSHSPRRWHDRDDYSRDRRGRSRSPYSRRRRERSLSAGDSRHPR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0217 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Dere09g0217 212 MobiDBLite consensus disorder prediction 22 65 - -
Dere09g0217 212 SMART rrm1_1 66 139 IPR000504 GO:0003723
Dere09g0217 212 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 201 - -
Dere09g0217 212 MobiDBLite consensus disorder prediction 174 189 - -
Dere09g0217 212 Gene3D - 5 149 IPR012677 -
Dere09g0217 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 136 IPR000504 GO:0003723
Dere09g0217 212 MobiDBLite consensus disorder prediction 142 212 - -
Dere09g0217 212 SMART rrm2_1 66 139 IPR003954 GO:0003676
Dere09g0217 212 CDD RRM_SAFB_like 66 139 - -
Dere09g0217 212 SUPERFAMILY RNA-binding domain, RBD 62 170 IPR035979 GO:0003676
Dere09g0217 212 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0217 Dere-ChrDere09 4952407 4956116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0217 65 147 Eukaryotic Initiation Factors Gene Family AT4G34110 31.325 9.45e-06 43.9