Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0215 ATGAATTCTGCGTCAGTGTCTTCTGATTTCTATGGCGTTGATGCTTGCCTCAGACATTTAAGCACAGACATGATCTCCTCTGATGGAGGCGGAAACCTGTTCTTCTCTCACCCTTTTCCTTACTCTTTGTTCTCCCCCACCGACGTCGCTCAGCACATCCCAAACAACCAAACACGCCAACACGCACTGAACCAAACTCCTCCTTCTCTTGCCCCGTTTTCCCCTTCTTTATTTCCCTGTTCTCCTCCAAGTTCATATGTGGAGAATCTAAGCCTTTACCAGGCTAATCCTGTGCAGCCTCCGTCAAATGGGATAGGAAATTTCTCTGTTTTGGATGAGTTCAAAGTGAAAAGTGAAGAATGCCAAATGGGTGTTGATTATAACTGCAACCAGAACTTTGTTCCTCAAAGTTACGATGGTTCTGAAAAAGTACCCAAGTCCATGCAAAGGAGCTACAGCAGTAACTCTTTTGATGGAAAGCCTGGTTTTCTCTTTATGCCCCATTATGATACTCTCATAGACTCCTCAAACTTTCAAAGCCAGGCCATGAATTCTCCTGAAAACAGCCTATTCACTGCACAAATGAGGAGGGTGTGCAGTACGGGAGATTTGCAGAACATGGTATCGACTCAAACTTCCCCCAAGAAGGGCTCATCCTTAGAGGGAGCAAACTTCAAAGTAGGCCGTTACAGTGCCGAAGAAAGAAAAGAGAGAATCTCTAAATACAGAGCCAAGCGAAGCCAGAGGAACTTCAACAAGACTATCAAGTATGCATGTCGGAAGACATTAGCCGACAATCGACCACGCATACGAGGCAGGTTCGCACGCAACGACGAGTTCGGCGAGAATCCCAAGCCTTCATGTTCAACCAGAGATGAAGACGAAGACGAGTTCTGGTTTGAAGGGTTGCATGAAGAACGAGAGGATATGATTGTGAGAGCAGAAGAATTTTTGTACAGTTACGGAGCTCCTCAGTGCCAGTACAATGGCTTCCGAGTTTGA 1002 0.4591 MNSASVSSDFYGVDACLRHLSTDMISSDGGGNLFFSHPFPYSLFSPTDVAQHIPNNQTRQHALNQTPPSLAPFSPSLFPCSPPSSYVENLSLYQANPVQPPSNGIGNFSVLDEFKVKSEECQMGVDYNCNQNFVPQSYDGSEKVPKSMQRSYSSNSFDGKPGFLFMPHYDTLIDSSNFQSQAMNSPENSLFTAQMRRVCSTGDLQNMVSTQTSPKKGSSLEGANFKVGRYSAEERKERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDEFGENPKPSCSTRDEDEDEFWFEGLHEEREDMIVRAEEFLYSYGAPQCQYNGFRV 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0215 333 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 50 295 IPR045281 GO:0009909
Dere09g0215 333 Pfam CCT motif 235 277 IPR010402 GO:0005515
Dere09g0215 333 ProSiteProfiles CCT domain profile. 235 277 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0215 Dere-ChrDere09 4912919 4914237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0215 208 283 C2C2-CO-like Transcription Factor Family AT5G24930 40.506 8.52e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere09g0215 CCT 8.7e-18 CL0281