Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0197 ATGCATCGAGATTGCGCAAACCATCCTCGTGAAGCTGCAGAAATTTACGGAGGGAAGCTGGTGAGAAGGCCAAAAGAAGGGGAAGGGGAAGAGGTTGAAGAAGAGCCAGCACAAGTATATAGGAAAATGGGACACCATTCTTGCTGCAATCAACAAAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACCCATGGCTATGGCTGTTGGAGTGAAGTCCCTGAGAAAGCTGGTCTTCAACGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCCGATATAAGACGAGGCAGGTTTACTCCCGAAGAGGAGAAGTTAATTATAAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCACATAGCAAGCCACTTGCCTGGTAGAACTGACAACGAAATAAAAAACTACTGGAATTCGTGGATCAAAAAGAAAATAAGAAAGCCTTCTGTGTCTTCAACCACCAGTGCACAAAGTAGTGTTGATCATCATCCCCAATACAACTACAATAATACCAATCAACTTGACTTTGCAAACCATGATAATCTAACAACAAAGCCACCTCCAGTTCAAGACACCATATTCTCATCCACATGCCCCCTATTTATGTTTGACACTAGCTCTTTAGATGGGTCAAGTACAACAACAATACTGGACCACAATAATGCAAGACCAGAAATCTTCCAGCACGATGCTATGGGATTAAGCACCGAGACATGGAATTTGAGCCACCATCAAGTCCAAGTCTTTCCTCCTCCGTCATCAACTTTCACGGCAGCCTCAGGCATGGTCACTTCCAGTTATCTGCCGCCATTGATAGAGAACGTGGACAACATGGTACCAATCCATGAAGTACAATCTTGTAGCATAGACGACGAGGGAGAAATGGCACTAGAGTGCTTGCAGAGGCAGGAGTTGAACGAGTGGGTGGACACACAGCAACAATGTCCCAACTTTATTTTTTGGGACAATGTGGAAGGGCAACTTGGTGGGGAAGAAATAGCACCGAGTTCATCAAATATGGGAACAAATACACTTTCTTCTTTTCCTTCGTCGTTGTGA 1098 0.4481 MHRDCANHPREAAEIYGGKLVRRPKEGEGEEVEEEPAQVYRKMGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVSSTTSAQSSVDHHPQYNYNNTNQLDFANHDNLTTKPPPVQDTIFSSTCPLFMFDTSSLDGSSTTTILDHNNARPEIFQHDAMGLSTETWNLSHHQVQVFPPPSSTFTAASGMVTSSYLPPLIENVDNMVPIHEVQSCSIDDEGEMALECLQRQELNEWVDTQQQCPNFIFWDNVEGQLGGEEIAPSSSNMGTNTLSSFPSSL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0197 365 MobiDBLite consensus disorder prediction 345 365 - -
Dere09g0197 365 SUPERFAMILY Homeodomain-like 53 150 IPR009057 -
Dere09g0197 365 Pfam Myb-like DNA-binding domain 109 153 IPR001005 -
Dere09g0197 365 Pfam Myb-like DNA-binding domain 56 103 IPR001005 -
Dere09g0197 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 103 IPR017930 -
Dere09g0197 365 Gene3D - 48 108 - -
Dere09g0197 365 CDD SANT 111 154 IPR001005 -
Dere09g0197 365 PANTHER MYB DOMAIN PROTEIN 55 43 285 - -
Dere09g0197 365 Gene3D - 111 183 - -
Dere09g0197 365 ProSiteProfiles Myb-like domain profile. 104 154 IPR001005 -
Dere09g0197 365 FunFam Transcription factor MYB26 110 179 - -
Dere09g0197 365 SMART sant 55 105 IPR001005 -
Dere09g0197 365 SMART sant 108 156 IPR001005 -
Dere09g0197 365 FunFam MYB transcription factor 48 108 - -
Dere09g0197 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 158 IPR017930 -
Dere09g0197 365 ProSiteProfiles Myb-like domain profile. 51 103 IPR001005 -
Dere09g0197 365 CDD SANT 59 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0197 Dere-ChrDere09 4754091 4756586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0197 43 354 MYB Transcription Factor Family AT1G63910 51.648 3.14e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g0197 Myb_DNA-binding 5.9e-15 CL0123