Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0181 ATGGCCAAGGGGAAGACTAGTTTAGGTCCAGTGTATGCTTATGCCTTTCTTCCTAACCGCTTAAATACTGCCGAAAGCTTTAGTTGGAAAAGAATTGCCTATTTGCTTTGCTATTCGGCCAAAAGAAAGACTAGTTTAGGTCCAAGGATTGCGATCGCCAATTATGCTCAATTGGACATCGTTGTGAGATTAAATACTGGTCGTAACTCGTTGTGCACCAGTGTCCCTCCTCCTCCTGTAGAAGGATCTAGAGAAAAGGCACCACGCGACGCAACAATGGCAAGCGAACTTGAAAAGAAAGCCAAAGATGCGTTCTTCGACGACGACTTCACTCTGGCTCTTCACTTTTACTCTCAAGCTATCAACTTGGATCCCTCTAACGCAGATCTCTTTGCCGACAGAGCTCAGGCCCATATCAAACTCAACAACTTCACCGAAGCGGTTTCTGATGCAAACAAAGCAATCGAATTGAACCCATCCATGGCAAAGGCGTACCTTCGTAAAGGGACTGCATGTTTTAAGCTTGAAGAGTTTCATACCGCCAAGACAGCACTTGAAATTGGTGCTTCTTTGGCTCAAAATGATTCAAGATTTCCCAAGTTGATCGAGGATTGTGATCGCCATATTTCAAAAGAATCCAATGGTCTCACTAGCTCTTTTTCGTCAAATGGGCCAGCATTGACTGTGTCGCCTAGTCCAACTGAAGAAGCTGGAAGATTGAGTAGTTATGAAACGAACGCAGATACCTCTGTGAGACCAAGATACAGACATGAGTACTACCAAAAACCTGAGGAAGTGGTTTTGACAATTTTTGCAAAAGGAATACCTGCTAAAAATGTGGTTGTTGACTTCGGTGAACAAATTTTGAGCATCACTATTGATGTTCCTGGCCAAGATGCCTATCATTATCAATCTCGATTGTTCGGAAAGATAATACCTGATAAGTGCAGATTTGAGGTGCTGTCAACTAAAGTTGAAATCCGTCTAGCAAAAGCTGAAGCTATTAATTGGACATCTTTTGAATATAGCAAGGATGCACTTCCTCAGAAAATAAATATGCCATCGACTGGATCTCGCAGGCCAGCATACCCATCATCAAAACTAACGAGAGATTGGGATAAGCTGGAAGCTCAAGTGAAGAAAGAGGAGAAGGAAGAAAAGCTAGATGGTGATGCCGGTTTGAACAAGCTGTTCCGAGATATATTCCAGGATGCAGATGAGGACATGAGGAGAGCGATGACCAAGTCTTTTGTGGAGTCCAATGGAACAGTGCTGTCAACAGACTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGAAGGTATGGAGATGAAGAAATGGGAATACTGA 1359 0.4341 MAKGKTSLGPVYAYAFLPNRLNTAESFSWKRIAYLLCYSAKRKTSLGPRIAIANYAQLDIVVRLNTGRNSLCTSVPPPPVEGSREKAPRDATMASELEKKAKDAFFDDDFTLALHFYSQAINLDPSNADLFADRAQAHIKLNNFTEAVSDANKAIELNPSMAKAYLRKGTACFKLEEFHTAKTALEIGASLAQNDSRFPKLIEDCDRHISKESNGLTSSFSSNGPALTVSPSPTEEAGRLSSYETNADTSVRPRYRHEYYQKPEEVVLTIFAKGIPAKNVVVDFGEQILSITIDVPGQDAYHYQSRLFGKIIPDKCRFEVLSTKVEIRLAKAEAINWTSFEYSKDALPQKINMPSTGSRRPAYPSSKLTRDWDKLEAQVKKEEKEEKLDGDAGLNKLFRDIFQDADEDMRRAMTKSFVESNGTVLSTDWKEVGSKKVEGSPPEGMEMKKWEY 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0181 452 SUPERFAMILY HSP20-like chaperones 247 348 IPR008978 -
Dere09g0181 452 FunFam Protein SGT1 homolog 93 219 - -
Dere09g0181 452 PANTHER PROTEIN SGT1 HOMOLOG 93 450 IPR044563 GO:0051087
Dere09g0181 452 Gene3D Tetratricopeptide repeat domain 74 214 IPR011990 GO:0005515
Dere09g0181 452 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Dere09g0181 452 Pfam CS domain 256 331 IPR007052 -
Dere09g0181 452 MobiDBLite consensus disorder prediction 213 247 - -
Dere09g0181 452 FunFam Protein SGT1 homolog A 250 353 - -
Dere09g0181 452 SUPERFAMILY TPR-like 93 203 IPR011990 GO:0005515
Dere09g0181 452 Gene3D - 253 344 IPR008978 -
Dere09g0181 452 ProSiteProfiles CS domain profile. 252 341 IPR007052 -
Dere09g0181 452 Coils Coil 365 385 - -
Dere09g0181 452 ProSiteProfiles SGS domain profile. 362 452 IPR007699 -
Dere09g0181 452 SMART tpr_5 162 195 IPR019734 GO:0005515
Dere09g0181 452 SMART tpr_5 128 161 IPR019734 GO:0005515
Dere09g0181 452 SMART tpr_5 94 127 IPR019734 GO:0005515
Dere09g0181 452 Pfam SGS domain 370 450 IPR007699 -
Dere09g0181 452 Pfam Tetratricopeptide repeat 109 148 - -
Dere09g0181 452 MobiDBLite consensus disorder prediction 432 452 - -
Dere09g0181 452 CDD p23_CS_SGT1_like 258 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0181 Dere-ChrDere09 4591420 4596858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0181 91 211 U-box Gene Family AT3G07370 26.446 1.12e-07 51.2