Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0163 ATGGGCAATTGCAGCGGCCTCCCTTCCGGCCAAACCCAACTCGACTCCGACGACCCCAACTCCGCCCAAGCTTCCTATGGCCTCTCCGTCCTTCCTCCCAATTCCAAGCCTTCGCCACCTGGACCACCTCTCTCCTCCGCCGTTGGCCGAGTCCTCGGCCGTCCTATGGAGGACGTCCGTTCCACCTACATCTTCGGCCGCGAACTAGGTCGTGGTCAATTTGGTGTAACCTACTTAGTCACCCACAAAGTCACTAAGCAACAATTCGCCTGCAAATCCATCGCCACACACAAACTCATTAACCGCGATGATGCCGATGACATTTGCCGCGAGGTCCAGATCATGCACCACCTCACCGGTCATCGCAACGTTGTTGAGCTCCAGGGAGCTTATGAGGATCGCCACTCTGTCAATTTGATCATGGAGCTCTGCGCCGGTGGGGAGCTCTTCGACAGGATCATAGCCAAGGGCCATTACTCGGAGCGTGCCGCAGCAAACTTGTGTCGCCAGATCGTGACGGTTGTGCATAATTGTCACTCCATGGGAGTGTTTCATAGGGACTTGAAGCCTGAGAATTTCTTGTTCCTCAGTAAAGACGAGAGTTCGCCTCTGAAGGCTACTGATTTTGGTCTCTCCGTGTTTTTCAAGACAGGAGATGTATTTAGAGATATTGTTGGGAGTGCATTTTATGTTGCTCCAGAGGTGCTGCGTAGAAGTTACGGACTCGAAGCTGATATTTGGAGTGCCGGGATTATATTATACATTCTGCTCTGTGGTGTCCCGCCCTTCTGGGCTGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGGGGACATATTGATTTTGTGTCAAATCCTTGGCCTTCCATATCAAGTGGCGCAAAAGATTTGGTTAAAAAGATGCTACGAGCTGACCCTAGAGAACGACTTTCAGCCGTTGAAGTCCTTTATCATCCTTGGATGAGAGAAGATGGGGATGCATCTGATAAGCCTCTTGATATTGCTGTTCTGACCAGAATGAAACAATTCCGGGCAATGAACAAACTAAAGAAAGTAGCTTTGAAGGTGATTGCAGAAAACCTTTCTGGAGAAGAAATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACGGATAAAAGTGGAACAATCACCTTTGAAGAGTTGAAAGCTGGTCTTCCCAAACTGGGTAGTAAGCTTTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTCTATAGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATACAAAGCATTTGAATATTTTGACAAGGATAGGAGCGGGTTTATCACAAAGGAGGAGTTGGAATATGCGCTGAAGAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATGCAGACAATGATGGAAGAATTAACTATGAAGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGAACTGGTTAACAACAGACGACGCAAATAA 1545 0.468 MGNCSGLPSGQTQLDSDDPNSAQASYGLSVLPPNSKPSPPGPPLSSAVGRVLGRPMEDVRSTYIFGRELGRGQFGVTYLVTHKVTKQQFACKSIATHKLINRDDADDICREVQIMHHLTGHRNVVELQGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANLCRQIVTVVHNCHSMGVFHRDLKPENFLFLSKDESSPLKATDFGLSVFFKTGDVFRDIVGSAFYVAPEVLRRSYGLEADIWSAGIILYILLCGVPPFWAENEQGIFDAILRGHIDFVSNPWPSISSGAKDLVKKMLRADPRERLSAVEVLYHPWMREDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSGEEIIGLKEMFKSMDTDKSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDSIEFITATMHMNRMEREDHLYKAFEYFDKDRSGFITKEELEYALKKYNMGDEKTIKEIIAEVDADNDGRINYEEFVAMMRKGNPELVNNRRRK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0163 514 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Dere09g0163 514 Pfam Protein kinase domain 65 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0163 514 CDD STKc_CAMK 63 320 - -
Dere09g0163 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Dere09g0163 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 496 - -
Dere09g0163 514 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
Dere09g0163 514 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Dere09g0163 514 Gene3D - 330 504 - -
Dere09g0163 514 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Dere09g0163 514 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Dere09g0163 514 FunFam calcium-dependent protein kinase 1 149 328 - -
Dere09g0163 514 Gene3D Transferase(Phosphotransferase) domain 1 149 329 - -
Dere09g0163 514 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Dere09g0163 514 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Dere09g0163 514 SMART efh_1 475 503 IPR002048 GO:0005509
Dere09g0163 514 SMART efh_1 404 432 IPR002048 GO:0005509
Dere09g0163 514 SMART efh_1 368 396 IPR002048 GO:0005509
Dere09g0163 514 SMART efh_1 440 468 IPR002048 GO:0005509
Dere09g0163 514 MobiDBLite consensus disorder prediction 1 49 - -
Dere09g0163 514 FunFam Calcium-dependent protein kinase 1 65 148 - -
Dere09g0163 514 SUPERFAMILY Protein kinase-like (PK-like) 37 343 IPR011009 -
Dere09g0163 514 SMART serkin_6 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0163 514 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Dere09g0163 514 SUPERFAMILY EF-hand 360 501 IPR011992 -
Dere09g0163 514 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Dere09g0163 514 MobiDBLite consensus disorder prediction 1 32 - -
Dere09g0163 514 ProSiteProfiles EF-hand calcium-binding domain profile. 472 506 IPR002048 GO:0005509
Dere09g0163 514 FunFam Calcium-dependent protein kinase 1 329 504 - -
Dere09g0163 514 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g0163 514 Pfam EF-hand domain pair 439 501 IPR002048 GO:0005509
Dere09g0163 514 Pfam EF-hand domain pair 369 429 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0163 Dere-ChrDere09 4425446 4430133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0163 49 513 EF-hand Containing Proteins AT4G23650 78.925 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere09g0163 Pkinase 8.9e-70 CL0016