Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0125 ATGACTACGCCTTCCGTCAAATACACCAACTACACTAAACTCGTGACACCAGAGGAACAACACTCACTTTCCGAAGGAATGAAGTATCCAAGAGTTGTAAGAATATGTGTGACAGACAGTGATGCCACAGACTCCTCCAGCGGCGAAGAAGGAGATGCTGTCACACACCACCGAGTGAGAAAATTTGTCAACCAGATTACCTTCACCGGAAACGACGTGGTTACTAGGCCCAAGAGCAAGCGTTATAAGAGTAAGAGGAGTAGGGTTATGGGAAGTCGGCGGGCAATGAAGCTATCTACGGGGAAAAAGTTTAGGGGAGTGAGACAGAGGCCGTGGGGGAAATGGGCGGCGGAGATCAGAGATCCACTGAAACGTGTACGGATGTGGCTGGGTACGTATGAAACTGCAGAAGAAGCTGCCATGGTGTACGATAAGGCAGCCATTAAGCTGCGCGGGTCAGAGGCATTGACCAATTTCATAACGCCACCGGGGAAGGAGTGTGAGCAGAAAAAGCTAAGTTCTCCCAAATCTGTTATGCAGTCCCAGTGGGGCAGTTCCTCGGAGGAGGTTGAATCTGTAACAATTAAAGAGGATATGAATGAATGTCGGGGTGAATCATCTTCGTCATCATGGGTGTCGAAGAATCTCTCAGAGTTCCCGGCGGATATATTTGACTTCCAGAATTCATTGCCGGTTATATTTGACACCTTCCATATACCAGAAAACGTCTGCTCCGACACCTTGCTCGCTCCCTCTGAAAATTTCAATTTGAGTTTTGATTTTGATTCGGGCTTTGGATTGTCGAGGTGGCATAGAGATGACTATTTCCAAGATATCGGAGATTTATTTTTCACAGATCCGCTTGTGGCTCTTTGA 876 0.4726 MTTPSVKYTNYTKLVTPEEQHSLSEGMKYPRVVRICVTDSDATDSSSGEEGDAVTHHRVRKFVNQITFTGNDVVTRPKSKRYKSKRSRVMGSRRAMKLSTGKKFRGVRQRPWGKWAAEIRDPLKRVRMWLGTYETAEEAAMVYDKAAIKLRGSEALTNFITPPGKECEQKKLSSPKSVMQSQWGSSSEEVESVTIKEDMNECRGESSSSSWVSKNLSEFPADIFDFQNSLPVIFDTFHIPENVCSDTLLAPSENFNLSFDFDSGFGLSRWHRDDYFQDIGDLFFTDPLVAL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0125 291 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Dere09g0125 291 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Dere09g0125 291 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Dere09g0125 291 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Dere09g0125 291 SUPERFAMILY DNA-binding domain 103 159 IPR016177 GO:0003677
Dere09g0125 291 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Dere09g0125 291 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Dere09g0125 291 CDD AP2 102 159 IPR001471 GO:0003700|GO:0006355
Dere09g0125 291 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Dere09g0125 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0125 Dere-ChrDere09 4076910 4077785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0125 1 291 AP2-EREBP Transcription Factor Family AT4G23750 39.548 1.92e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g0125 AP2 9.4e-13 CL0081