Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0118 ATGGCTGAGATAAGTGCAGAAGTGCCCTCCTTGCAAGTCCCTACGAAGAGATCACGGAGCCGAAGGGCGTTGAAGGATAAAAACCCATCAACAGATGATGCCAAGGTCTTGGGCAAGAAGGTGTCCGAGTCCCTTACACCACAGGCTTCAGTGGAATCAGACGCCGGAAAGGAGAACCACCAGAGTGTTTCTCAACCCCACTCCTCGCCCAAGAAGGGAAGAGCTGCCTCCAAGAAACAGTCGAAGCAATCTTTCGAGAAAGACTTGCTAGAAATGCAGGATATGCTGCAGCAGTTGCGCCTTGAGAAGGAGAAGACTGAAGAGCTCTTGAAGGCCAAAGATGAGATGTTGAAGCAGAAGGATGAAGAGCTTCACGAGCGTGGCCGTGAGCAGGAGAAGCTTCAGATGGAGTTGAAAAAATTGCAGAAGCTCAAGGAGTTCAAACCTACTATGAATTTGCCTTTGCTGAGAGACAAGGAGCAAGAAAAGAAGGACAAGAAGAAGAATGGTTGCGCTGAGAAGAAAAGGCCTCCTCCACCTTACATTATGTGGAGCAAAGATCAATGGGCTGAGATTAAGACGGCGAATCCAGAGGCAGAATTCAAGGACATTTCAAACATGTTAGGAGCCAAATGGAAGACCATTAGTGATGAAGAGAAGCAGCCTTATGAGGTGAAGTATCGTGTAGAGAAAGAGGCGTATTTGCGGGTAATTGCAAAGGAGAAACGTGAAAGTGAGGCAATGAAGCTCTTAGATGAGGAGCAAAAGCAGAAGACTGCTATGGAATTGCTTGAACAGTATATGCAGTTCAAACAGGAGACTCAAAAAGAAAGCAAGAAGAACAGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTATGTCAGCTTTTATCCTGTACACAAATGATAGGCGGGCAGCTATTCTTGCAGAGAACAAGAGTATCTTGGAGGTCTCAAAGATTACAGGTGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGACCTTATGAAGAGATGGCAAAGAAGAACAAGGAAAAATATATTCAAGAAATGGAGGCTTATAAACAAAAGAAGGAGGAGGAGGCTGCGAATCTCCGGAAGGAAGAGGAGGAGCAGATGAAACTTCAGAAACAGGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACAGAAAATCTGATTAAGAATCAGCAGAAGAAGAAACAGAGCAAGGAAGATAAGAATTCTGATCCTAACAAGCCTAGGAGACCACCATCCTCATTTCTCCTATTCAGCAAAGAGGCAAGAAAGAGGTTACAGGAGGAACGACCGGACATCAATAACTCCACCTTGAATGTTCTCATATCAGTGAAATGGAAGGAACTGAGTGAAGGAGAGAGACAAGTATGGAATGACAAAGCAGCGGAAGCAATGGATGCATACAAGAAGGAATTGGAAGAATACAACAAATCCATTTCTGAAAAGCTGAACCAGAGAACAGAACAGTGA 1491 0.4433 MAEISAEVPSLQVPTKRSRSRRALKDKNPSTDDAKVLGKKVSESLTPQASVESDAGKENHQSVSQPHSSPKKGRAASKKQSKQSFEKDLLEMQDMLQQLRLEKEKTEELLKAKDEMLKQKDEELHERGREQEKLQMELKKLQKLKEFKPTMNLPLLRDKEQEKKDKKKNGCAEKKRPPPPYIMWSKDQWAEIKTANPEAEFKDISNMLGAKWKTISDEEKQPYEVKYRVEKEAYLRVIAKEKRESEAMKLLDEEQKQKTAMELLEQYMQFKQETQKESKKNRKEKDPLKPKHPMSAFILYTNDRRAAILAENKSILEVSKITGEEWKNMTEEQKRPYEEMAKKNKEKYIQEMEAYKQKKEEEAANLRKEEEEQMKLQKQEALQLLKKKEKTENLIKNQQKKKQSKEDKNSDPNKPRRPPSSFLLFSKEARKRLQEERPDINNSTLNVLISVKWKELSEGERQVWNDKAAEAMDAYKKELEEYNKSISEKLNQRTEQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0118 496 Coils Coil 465 496 - -
Dere09g0118 496 SUPERFAMILY HMG-box 277 362 IPR036910 -
Dere09g0118 496 CDD HMG-box_AtHMGB6-like_rpt1 175 242 - -
Dere09g0118 496 MobiDBLite consensus disorder prediction 24 39 - -
Dere09g0118 496 Gene3D High mobility group box domain 171 250 IPR036910 -
Dere09g0118 496 MobiDBLite consensus disorder prediction 355 439 - -
Dere09g0118 496 SUPERFAMILY HMG-box 163 238 IPR036910 -
Dere09g0118 496 MobiDBLite consensus disorder prediction 272 291 - -
Dere09g0118 496 Coils Coil 253 273 - -
Dere09g0118 496 Pfam HMG (high mobility group) box 175 237 IPR009071 -
Dere09g0118 496 Pfam HMG (high mobility group) box 415 483 IPR009071 -
Dere09g0118 496 Pfam HMG (high mobility group) box 290 356 IPR009071 -
Dere09g0118 496 MobiDBLite consensus disorder prediction 149 184 - -
Dere09g0118 496 MobiDBLite consensus disorder prediction 355 414 - -
Dere09g0118 496 MobiDBLite consensus disorder prediction 149 174 - -
Dere09g0118 496 Coils Coil 338 408 - -
Dere09g0118 496 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 290 356 IPR009071 -
Dere09g0118 496 MobiDBLite consensus disorder prediction 268 295 - -
Dere09g0118 496 MobiDBLite consensus disorder prediction 43 71 - -
Dere09g0118 496 MobiDBLite consensus disorder prediction 1 91 - -
Dere09g0118 496 Gene3D High mobility group box domain 395 494 IPR036910 -
Dere09g0118 496 Gene3D High mobility group box domain 273 370 IPR036910 -
Dere09g0118 496 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 174 242 IPR009071 -
Dere09g0118 496 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 491 IPR044601 GO:0003677
Dere09g0118 496 SMART hmgende2 173 243 IPR009071 -
Dere09g0118 496 SMART hmgende2 414 484 IPR009071 -
Dere09g0118 496 SMART hmgende2 289 357 IPR009071 -
Dere09g0118 496 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 415 483 IPR009071 -
Dere09g0118 496 SUPERFAMILY HMG-box 410 488 IPR036910 -
Dere09g0118 496 Coils Coil 82 144 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere09g0118 HMG_box 1.2e-16 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0118 09 4009773 4012080 Dere09g0118 09 4009773 4012080 ECH