LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g0101	ATGGAGGGAATGCACGAGAGAGAAGCACAGCTTGAACTTCAGAACGGTGCTGATATCGGGTCATCTCTATCGAATCTGATATTATCAGGTGGGGCGAACACTTTGGATTCAATTTTCTCTCATTGCCCCCAGTCAAATCCCAGTAGCAACCCCATGTTTGAGCCCTTAAGCTCTTGCGGGTTCGAACCTCTAGGCTCGTCGGTGTACCTCCGTCAAAGAGATATTCTGCAGAAGTTCTACGAGGATAGCCGAGTGAGTAGCTCAGTTGGGAGCATATCACTGACAAAGCGGCCTCTAGCCTGCGTAGGCGCAACTTCTTACATGACTCCCTGCAAGAAAAAGCTATACAGGGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCAGAGATTAGACTCCCTCAGAACAGAATGAGAGTGTGGTTGGGCACCTATGAAACCGCTGAAGCTGCTGCTTATGCGTATGATCGTGCCGCGTATAAGCTCCGAGGCGAATACGCTCGTTTGAATTTCCCCAATTTAAAGGATCCCAGCAAGCTAGGATTCGGAGATTGCTCCAGATTGAATGCTTTGAGGACCTCCGTGGATGCTAAAATTCAGGCTATTTGTCAAAAGGTGAAGAGGGAGAAAGCCAAGAAGAGCGCCGCTAAGAAGCTTAATCCCAGCACCCATGTTACTAACAGCGGTCAGACTGAGAAATCCCAAAGGATTGACTCATCCTCTTGTTCTTCCTCCTCCTTACCCTTATCACCTTTAATATTTGATGATAGCTGGACAAACGAGTTGATTTCACCTACCCTTTCAGAAGATGGAATATGGAAGGGGGAGAACTCGCCCTCCTCTGTTTCAATGGAGTGTCCAACAATGGTAAAGCATGAATCGGAATTCGAAGGCTGTTCCTTGGCAAGGATGCCTTCCTTCGATCCCGACTTGATTTGGGAAGTCCTGGCCAATTAA	957	0.4828	MEGMHEREAQLELQNGADIGSSLSNLILSGGANTLDSIFSHCPQSNPSSNPMFEPLSSCGFEPLGSSVYLRQRDILQKFYEDSRVSSSVGSISLTKRPLACVGATSYMTPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSKLGFGDCSRLNALRTSVDAKIQAICQKVKREKAKKSAAKKLNPSTHVTNSGQTEKSQRIDSSSCSSSSLPLSPLIFDDSWTNELISPTLSEDGIWKGENSPSSVSMECPTMVKHESEFEGCSLARMPSFDPDLIWEVLAN	318

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g0101	318	FunFam	Ethylene-responsive transcription factor 2	114	173	-	-
	Dere09g0101	318	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	34	316	-	-
	Dere09g0101	318	Gene3D	AP2/ERF domain	115	173	IPR036955	GO:0003700\|GO:0006355
	Dere09g0101	318	MobiDBLite	consensus disorder prediction	219	246	-	-
	Dere09g0101	318	ProSiteProfiles	AP2/ERF domain profile.	115	172	IPR001471	GO:0003700\|GO:0006355
	Dere09g0101	318	MobiDBLite	consensus disorder prediction	213	246	-	-
	Dere09g0101	318	PRINTS	Ethylene responsive element binding protein signature	116	127	IPR001471	GO:0003700\|GO:0006355
	Dere09g0101	318	PRINTS	Ethylene responsive element binding protein signature	138	154	IPR001471	GO:0003700\|GO:0006355
	Dere09g0101	318	Pfam	AP2 domain	116	165	IPR001471	GO:0003700\|GO:0006355
	Dere09g0101	318	SMART	rav1_2	115	178	IPR001471	GO:0003700\|GO:0006355
	Dere09g0101	318	SUPERFAMILY	DNA-binding domain	115	172	IPR016177	GO:0003677
	Dere09g0101	318	CDD	AP2	114	174	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g0101	Dere-ChrDere09	3905841	3906797	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g0101	17	318	AP2-EREBP Transcription Factor Family	AT1G64380	46.957	6.97e-68	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere09g0101		AP2	4e-13	CL0081