Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0085 ATGGGACCCTCTATTCAGTATCCTTTCCATTTGAGAGGAGTTAATGAAAGCAGCAATTGCGGGTCCCAAGGCTTCGAGGTTTTCTGTGACAACAGCAACCAGACATTGCTTACACTCCCAAATGCCGGAGATTTCGTTGTCAAAAATATCTCCCTGGCGCAAAAGAAAGCTTGGATGAATGACCCACAGGATTGCCTTCCCGCACGCTTCCTCCACGGCATAAACCTTCCAGGTTCGCCTTTCCAATGGAGCAGCGATTATCATGATTTCATATACGTCGCCTTTCTCAACTGTACCGCCCCAGTGCCGGACTCCGTCCCATTTACTCACAAGGTACGTTGCCTTAGCACTGACGAGGAAAATTACTCGGTGGTGGCTGCTTTGTTGGATCCTGCCTTTCCAAGGTCGTCGCCCATACGAGGATGCCAGCAGATTTCGTCAGCATTGGTTCCAATTGATAATGTCGCACCCGACCTATTATTGTCCAACAACCTTTACTCTGATATCCAGTTGCAATGGAACAATCCCGAGTGCATATATTGTGAAAACTTCCAAGTCTGTGGATTCTCAGGGGATTCGGGTCCTGATCATGACTCGGCTTGCAATCTCCCAAGCCCAGATGAAGAGCTTCCAAGGAGTGATCCTGATGGCAAAATTGAGAAACTGTTAGGAGTGGGAATAGCTGGAGCTGTATGCTTTACCGTGGCTGGGCTTACCCATTTGTTGAGTGCTAAGATGGAGGCACAGACCGTGGGCACTACAGAATCAGAAACAAACACGGCGGAATCCGGTGACGTGAGAATGGGGATTGATAGGTCAACCATCGAGCAGTATCCGAAAATCCAGATTGGTCATAGCGGAAGATTGCCCAACTCCACTGACAATGTTTGCTCCATATGTTTGTGCGAGTACGAGCCCAAGGAAACAATCAGAACCATTCCCCACTGTAGTCACTATTTTCATGCCAATTGCATCGATGGGTGGCTCAAGATGAACGCTACATGCCCCTTGTGCCGACATTTACCCCACGACGTCGCTTCAGCTTCTCATCATTGA 1056 0.4867 MGPSIQYPFHLRGVNESSNCGSQGFEVFCDNSNQTLLTLPNAGDFVVKNISLAQKKAWMNDPQDCLPARFLHGINLPGSPFQWSSDYHDFIYVAFLNCTAPVPDSVPFTHKVRCLSTDEENYSVVAALLDPAFPRSSPIRGCQQISSALVPIDNVAPDLLLSNNLYSDIQLQWNNPECIYCENFQVCGFSGDSGPDHDSACNLPSPDEELPRSDPDGKIEKLLGVGIAGAVCFTVAGLTHLLSAKMEAQTVGTTESETNTAESGDVRMGIDRSTIEQYPKIQIGHSGRLPNSTDNVCSICLCEYEPKETIRTIPHCSHYFHANCIDGWLKMNATCPLCRHLPHDVASASHH 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0085 351 CDD RING-H2_EL5-like 297 339 - -
Dere09g0085 351 SUPERFAMILY RING/U-box 292 341 - -
Dere09g0085 351 ProSiteProfiles Zinc finger RING-type profile. 297 339 IPR001841 -
Dere09g0085 351 Pfam Ring finger domain 296 339 IPR001841 -
Dere09g0085 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 343 IPR013083 -
Dere09g0085 351 SMART ring_2 297 338 IPR001841 -
Dere09g0085 351 Pfam Wall-associated receptor kinase galacturonan-binding 3 61 IPR025287 GO:0030247
Dere09g0085 351 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 341 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0085 Dere-ChrDere09 3770880 3772000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0085 6 342 C3H Transcription Factor Family AT2G25410 32.565 1.77e-42 150