Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0084 ATGGCTTCTTTGCCATTGTTTGTCTTTCTCTTCCTCTTCCTCATTCGAAATAAAACAACAAGCTTTCAAATCTGCGAGACGACATCCTGCGCAATAGACGGGCCTTCGGTTCAGTTCCCTTTCCAGTTGAACAGAGAAGCCAAAAATCAAAGCAATCGTTGTGGGTACCCGGGTTTTGAACTTTCCTGCAACAACAGAAACCAAACGCTGCTTAAGCTACCGAACTCTGGAGACTTCCTGGTGAATTCAATCTCCCTTGAAGACCAAAAGATTTGGATCAACGACCCTGATGATTGCCTCCCCAGACGATTCCTGGATAACATCAACCTTACAGGTTCCCCCTTCGAATTCAGCGATGATTCTAGTGTTGTCGATTTTACCTTTCTCGACTGCCCCTCCAACGTCACCCAGTTGTATCCTCAAATCGCCATCACTTGCTTAAGCACTGCCCAAGATCGCAACCGTTCGGTGGTTGCTGTGTTGTCGAATCCTCCCTTTTCAACGCCCTGGATTTCATGGTGCCACGCCATTTCCTCAGCTTCGGTTCCCTTTTCTGATACCGGAAGGTTTTTCAGGATGAACCTTGACTCTGATATAGAATTAAAATGGAACACGCCTCGCTGTGGGAATTGTGTCGCGGAAAAAGGACGGTGTGGGTTCTTGGAGGACACGGGTCTTGACCTTGCTTGCTATTTACCAAGCCGAGGCGTGGGAATACCTGGAATCCTTTGTGTAGCGGCGCTTGTGTGGTTCTGTAGCGGGAAGAGACAGCGAAGGCAGGGGAACATTGAGTTTAATGTTGCACAGCCACAGCACTGTGTAGTAGCAATGGGGCTTGATGGGGCAACCATTGAGAAATACCCGACGACCCATATTGGTGACAGCGGACGATTGCCCAACCCCAGTGACAATGTGTGCTCCATATGTCTCTGTGACTACCAACCCCATGACACCTTAAGGACTATTCCAGAGTGCAATCACTACTTTCACTCCAATTGCATTGATGGGTGGCTCAAGATGAATGCCACATGCCCCTTGTGTCGAAAATTAGCCCATAATTCCTCTTCCTCACTCTCTCCAAATTCTTCATAG 1092 0.4817 MASLPLFVFLFLFLIRNKTTSFQICETTSCAIDGPSVQFPFQLNREAKNQSNRCGYPGFELSCNNRNQTLLKLPNSGDFLVNSISLEDQKIWINDPDDCLPRRFLDNINLTGSPFEFSDDSSVVDFTFLDCPSNVTQLYPQIAITCLSTAQDRNRSVVAVLSNPPFSTPWISWCHAISSASVPFSDTGRFFRMNLDSDIELKWNTPRCGNCVAEKGRCGFLEDTGLDLACYLPSRGVGIPGILCVAALVWFCSGKRQRRQGNIEFNVAQPQHCVVAMGLDGATIEKYPTTHIGDSGRLPNPSDNVCSICLCDYQPHDTLRTIPECNHYFHSNCIDGWLKMNATCPLCRKLAHNSSSSLSPNSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0084 363 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 349 IPR046948 -
Dere09g0084 363 SMART ring_2 306 347 IPR001841 -
Dere09g0084 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 352 IPR013083 -
Dere09g0084 363 SUPERFAMILY RING/U-box 300 352 - -
Dere09g0084 363 Pfam Ring finger domain 305 348 IPR001841 -
Dere09g0084 363 Pfam Wall-associated receptor kinase galacturonan-binding 25 95 IPR025287 GO:0030247
Dere09g0084 363 ProSiteProfiles Zinc finger RING-type profile. 306 348 IPR001841 -
Dere09g0084 363 Pfam Wall-associated receptor kinase C-terminal 167 233 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0084 Dere-ChrDere09 3768380 3769717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0084 23 348 C3H Transcription Factor Family AT2G46495 36.446 5.54e-62 200