Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0083 ATGACTTTCTTGTTTGCTTTTCTACTATTCCTAATTCAGGGCGCAAGGGCTCAAGTGGAGGTTTGCGGCGGCAAGTTCTGTGGTGGAATTGAGATTAAGTTTCCTTTCGGTTTGAAAGGAGCCAGCCAGGAGGGGCGTCGCTGTACCTACCCCAAGTTCGAGGTTTGGTGCGACGAGCAGAAACGCACCATCCTTAGGCTCCCAAACTCAGGGAACTTAGTGGTGGAGAGCATCAATTACGAGGCCCAAACCATTCAGGTCAACGATCCCAATCAATGCCTACCAAAACGGTTCTTGCACAACCTCAGCCTTTCGGGCACGCCCTTCGACTTCGATCCCAGCGTTTATAGTCTCTTAAACCTCACCTTCCTTCGTTGCCAGTCCAACATAACTTACATCTCGCCAATTTCTTGCCTCGGCGATCCCACCAACTCTTCCTCCGTAGTTATATACACATGGTCGCGACCCGTTATCGGACTCTTGTCTCAATGGTGCGACGTCGTTTCTTCCGTCTTCTTTCCGATTTCAAGAGCCTCCATGTGGCCTTTCTGGCCCGATCTCACCCAAGATATACAGTTGACGTGGACCGACCCCGATTGTGGGGACTGTGAAGCGCAGGAGCAAGATTGTGGGTTCGCAAGGGATAGGGGTTTACAAGTGGGATGCTTTTCCCGTCCCCAGAAGGAAAGCCCAGGTCTTCCAAGAAGTGCCAAATATGGGTTAACAATAGGAGTGGGAATACCTGGACTGTTGTGTTTGATTGGAGTTTCCTGTTTTATGTGCGGCAAGGTCAGGATGTACAGTCAGCGTCGCAACCCTAGGCCCAGCATTGAGCTCCCTGTGTCCGTTGTGGTACAGACTGGCCCTTTTATGATGGGGCTTGATGGGCCGACAATAGAAAAGTATCCCAAGACTCTACTCGGTGAGAGTGGGCGGTTACCCAAGCCCAACGATAATACCTGTTCGATATGCCTGTCTGAGTATGAGCCCAAGGAGACGTTGAGGACTATACCTGATTGCAACCATTATTTTCATGCACACTGTATAGATGAATGGCTCAAGATGAATGCCACCTGCCCCGTATGCCGGAATTCGCCTCCGTTCACCCCTTCTACTTTTTCGTCTTTGTCTCCTTCTTCCTCTCTATCCTCTACGCCTTAA 1161 0.5039 MTFLFAFLLFLIQGARAQVEVCGGKFCGGIEIKFPFGLKGASQEGRRCTYPKFEVWCDEQKRTILRLPNSGNLVVESINYEAQTIQVNDPNQCLPKRFLHNLSLSGTPFDFDPSVYSLLNLTFLRCQSNITYISPISCLGDPTNSSSVVIYTWSRPVIGLLSQWCDVVSSVFFPISRASMWPFWPDLTQDIQLTWTDPDCGDCEAQEQDCGFARDRGLQVGCFSRPQKESPGLPRSAKYGLTIGVGIPGLLCLIGVSCFMCGKVRMYSQRRNPRPSIELPVSVVVQTGPFMMGLDGPTIEKYPKTLLGESGRLPKPNDNTCSICLSEYEPKETLRTIPDCNHYFHAHCIDEWLKMNATCPVCRNSPPFTPSTFSSLSPSSSLSSTP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0083 386 Pfam Ring finger domain 319 363 IPR001841 -
Dere09g0083 386 SMART ring_2 321 362 IPR001841 -
Dere09g0083 386 CDD RING-H2_EL5-like 321 363 - -
Dere09g0083 386 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Dere09g0083 386 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Dere09g0083 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 368 IPR013083 -
Dere09g0083 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 366 IPR046948 -
Dere09g0083 386 SUPERFAMILY RING/U-box 315 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0083 Dere-ChrDere09 3764279 3766799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0083 29 366 C3H Transcription Factor Family AT2G25410 38.109 6.24e-58 191