Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0071 ATGTTAGATTCTGGTTTGAGTGGGCTACTGTCTTCAATGGAAGCGGATTTCATCATCAATGGCATGGTTGCAGAAGATGCTTCTAAGGCGGATGACGTTGCCGATAATGATAATTTAGTTATTGAAGGGGAAAGATGTGGAATTTGCATGGACGTTGTTATTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGTTTTGCATGCATTGACAACTGGGCTACCATCACAAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATTACTTGTGTTCCAGTATATGACACAATTGGAAGCAACAAAGTTGAAGATGACACATTGGCCAGGGATGATGACTGGTCCATTGAAGGGAAGAATAACACTCTGTCATTTCCCTCATACTATATTGATGAAAATGTAATTGTCTTCCTTATTTGCTTGGATGGTGATGGCTGCAAAATTCGGAGTGGGTCAGCAACTAATGAAGGTGATTCATGCCTTGATACATCAATTGCTTGTGATTCATGTGATATATGATTGGTGGGAGTCAGCGGTACTGTAGACATGTGCTCCCAAAACACACCATGGATTGCTTGTTTTATTTCTGTGGAAGGTGACACTATTAAGGTGCTGCCATCTATGGCATCTCATTCTAATTATGTACTTCATGATTGCATGAGTCAGACATGGTGGTATCATGCTTTCTGTGTGGGATTTGATCCCGAAGGTACATCTGACATTACATGGTTATGCCCCAGATGTGTGCCAGATGAAGTTACTGAAAAAATGGATGCCAGTTCATGGGAGAGGACAACCGTGGAACTTAACCCAGAGAATGGTAGCAAGGAATGTCAGGCTGAGGATTCTTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACTGGAGAGACAGCTGTTGTTGTCTCTTTGGTTGAAGGAAATCAATGGACTCCAGCATCAAGTGAGAAGGGGTTGTCACCCCTTGAAGTTAGCAAGAATCCAGTGACTCAATCTTGTGTTTCCATATCTGACACAAATAACCACCAAAGTGAGACGGAGAAGACTAATAATTCAAGAATGGAGGAACAGGAGCTGAAGCTGTCGTTATCACAGAATGTGTTCTGTAGCTTACCATCTAAATCCTTTGGGCCTGATGATTTGGAAAAAAGTGCTTATGGAGAAAGGAGTGAGCCAAATAGCTTCATTGGAACCAAGATATTAAATGAAGCTCCTGAGAAAACTAGTTTGTCTAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTGTCAGTCGGCTCCTTTCTATGTGTTGATGACATGGACACAAATGACATAAAAGATCAAGTAACTGACACCCAGCAGTTAAGTCCTGAAGAATTTATTTTGAAAGGAGATGAAATTGAACTGAATGCTCAAGAGGACCATGCTAGAGTAATGGGAGGAAAGAGAACCCGTGCCGATTACAGAGTGAGTAGTGGTGTGGGTACACTTGTAGTGAGTAATGATCAGGGTCATGTAGAAGTTAATAGAGATGCCAAACTTGAACCTGCAGTTGAAGTATCGCAAAAGAAACTGAGAGCTGATAGCAGTCTACTGATTAATAACAAGGACTTAGCAGATGCTCCTCTTTCAGATACTGCTAAAAGAAACCCTTCTACTTCAGCTGTTTCCCGAAATGATGATTTGAAACATCATCTTACAAAGGAGAATGTCATATCAGATATAATGAGTATAGTAAGAGGCACAAACCGGAGGCTTTTGAAGGGAATTTCTGACATTAAATCTAAAAGCAATGAAAATATAGCAGGGTTGAGGGTTAAAAAGATCATGAAGAGAGCTCCTGATCATGGGGAATCATCCTTGGTAGTCCAAAATCTTAGGGAGGCAATTAGAGAAGCTGTCCGGAATAAATCCTCCAAAAATTTTGGAGAAAACCTTTTTGATACAAAGCTTCTTGCAGCATTCAGAGCTGCTGTTGCAGCGCCCAAAACTGAACCTGTAAATAAGCTGCCCCCTGTAGCTTTGAAGGCAAGGAAGTCAATGCTGCAGAAAGGGAAAGTTCGTGAACATCTAACAAAGAAAATTTTTGGGACTTCAAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCAACAAAGCCTGAAAAGATTGAAACTTTGAAGTCAGTTCTTGATCTCCTAAGAGAGAGTTCAGAGAGCCCAGAATCAAAAGAGGGTCCTGAATGTCAGGCCAAAAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACGTCTGTTTTTCCAAGAAAAAATGATGTCAAGCCGCTTTCTGCCCTTAAAACTGCTGGTAACTCAGACCAGAGTAAACAGCATATCCCTTCAGGAAAAGGATCAAATCAGTCTCTTGATAATGGTACTATTAAAGCAACAGAGACAAATAAAGTTGTACCAAAGGCCAGCGTTTTCTCATCTAAAAATAAAGTAGATAAGAAGATTGTGCATGGCTTAGTTGGTGATAATTCAGCTTCTGGTAAAGTACATTTAAGAAGACACACTGAAGGGACATCAGTTTCTTGCTCTGGTGGTCCCAGAGTTGACACAAAGGAGTTAGGCGTTAAGTCAGATATTATGAAGAGTGAGAAAAGAAAATGGGCCTTGGAGGTCCTGGCAAGAAAAACAGCTGCTGCTGGCAAGAAAACAACGAATGAAAATCAGGAAGGTAATGCAATCCTTGAAGGAAATTATCCCTTACTGGCCCAATTGCCAGCTGATATGAGACCGGTGTTGGCACCCAGTCACCACAATAAAATTCCCATATCAGTAAGGCAGACACAACTTTACCGCCTGACGGAGCACTTATTGAGGAATGTGAATCTGTCGGTCATTCGCAGAACTGCAGATACTGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTAGTGTATCTGAATCTCTGTTCACAAGAGCTCTTGCATCGCTCAAATAACAGAAAATCTAGTGGAACAACAGATATAATTCCGCAGGTCTCATCAGCAGTCCTTACTGATAAAGCTGAACAAAATACTGATGATCCTTCGACTGACTCTTCAGTTGAAATAGCCCTAAAAAATGCTGGTCTTTTGTCTGATTCACCTCCTTGTAGTCCACGTGAGAAGAGGGAAATGCTTAATAAAGAAGATGATCTTTCAGGGCCTGATAATATACTTGAACTGGATTCTCAACCAGAGATGGATATATATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCAAGTGTTGCTAAAGTCCTAAACCCACAAGAGGAAAGTGAGTCAAAAATGAAACTCATTTTCTCTACCATGGACTTGAAAAATTCAGATACTGCTTTGGACTGTGAGAGGTTGGAAAACAATGAAGTGCGACAAGATCAATCCTGCTCATCAAAACAACATGATGATGCAGGCAGCAGGGACTCTGCAATTGATGCAGAGATTGCGATGCCTTCTGGTCCTTCTGAGGCTTTTCTCGGTGAGGATACTGTTGAGCCATGTGATGCAGAATTTGACGAATTATATGGTCCAGACAAAGAACCACTTGCAAAAAAATTTTCGAATGAGGAGTTTAGAACATTACATGGAGAGGGCAAGACAGAAACTTTTTCTGAGGGCAATGACTGTCATGATAAAGAACACGTATCAGATCAAGCAGTAAATGCATCTGAACTTGGGAATGTCAAACTTGCAAAGAATGTGCTTGCCACTGCTATCGCTGACAATTCATCTAACGTATCTAATATTAGTGAAAATTTCCGGAGGAAGGGAGAGAAATCTGACACCATTGCTGAGCAGTCTGACTCTGCAAATCATGTAGTTAGGAAGGTAGAAGCTTACGTCAAGGAGCATATCAGGCCACTGTGCAAGAGTGGTGTAATCACAGCTGAACAATACAGGTGGGCTGTAGCAAAAACAACTGAAAAGGTTATGAAGTACCATAGCAAAGCGAAGAATGCCAATTTCCTCATAAAGGAAGGTGAGAAAGTGAAGAAACTTGCAGAGGAGTATGTTGAAGCAGCCCAGCAGAATAGAAAAAATTGA 4119 0.4105 MLDSGLSGLLSSMEADFIINGMVAEDASKADDVADNDNLVIEGERCGICMDVVIDRGVLDCCQHWFCFACIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDTLARDDDWSIEGKNNTLSFPSYYIDENVIVFLICLDGDGCKIRSGSATNEGDSCLDTSIACDSCDIXLVGVSGTVDMCSQNTPWIACFISVEGDTIKVLPSMASHSNYVLHDCMSQTWWYHAFCVGFDPEGTSDITWLCPRCVPDEVTEKMDASSWERTTVELNPENGSKECQAEDSFSGKVSVSVADTGETAVVVSLVEGNQWTPASSEKGLSPLEVSKNPVTQSCVSISDTNNHQSETEKTNNSRMEEQELKLSLSQNVFCSLPSKSFGPDDLEKSAYGERSEPNSFIGTKILNEAPEKTSLSRNESDMGLHLGLSVGSFLCVDDMDTNDIKDQVTDTQQLSPEEFILKGDEIELNAQEDHARVMGGKRTRADYRVSSGVGTLVVSNDQGHVEVNRDAKLEPAVEVSQKKLRADSSLLINNKDLADAPLSDTAKRNPSTSAVSRNDDLKHHLTKENVISDIMSIVRGTNRRLLKGISDIKSKSNENIAGLRVKKIMKRAPDHGESSLVVQNLREAIREAVRNKSSKNFGENLFDTKLLAAFRAAVAAPKTEPVNKLPPVALKARKSMLQKGKVREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRESSESPESKEGPECQAKNPILSRLYLADTSVFPRKNDVKPLSALKTAGNSDQSKQHIPSGKGSNQSLDNGTIKATETNKVVPKASVFSSKNKVDKKIVHGLVGDNSASGKVHLRRHTEGTSVSCSGGPRVDTKELGVKSDIMKSEKRKWALEVLARKTAAAGKKTTNENQEGNAILEGNYPLLAQLPADMRPVLAPSHHNKIPISVRQTQLYRLTEHLLRNVNLSVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRSNNRKSSGTTDIIPQVSSAVLTDKAEQNTDDPSTDSSVEIALKNAGLLSDSPPCSPREKREMLNKEDDLSGPDNILELDSQPEMDIYGDFEYDLEDEDYIGASVAKVLNPQEESESKMKLIFSTMDLKNSDTALDCERLENNEVRQDQSCSSKQHDDAGSRDSAIDAEIAMPSGPSEAFLGEDTVEPCDAEFDELYGPDKEPLAKKFSNEEFRTLHGEGKTETFSEGNDCHDKEHVSDQAVNASELGNVKLAKNVLATAIADNSSNVSNISENFRRKGEKSDTIAEQSDSANHVVRKVEAYVKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKYHSKAKNANFLIKEGEKVKKLAEEYVEAAQQNRKN 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0071 1372 MobiDBLite consensus disorder prediction 332 359 - -
Dere09g0071 1372 Pfam Ring finger domain 45 85 IPR001841 -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 332 349 - -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 1058 1076 - -
Dere09g0071 1372 SUPERFAMILY RING/U-box 35 91 - -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 1149 1188 - -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 779 808 - -
Dere09g0071 1372 PANTHER RING FINGER PROTEIN 41, 151 127 1363 - -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 1049 1085 - -
Dere09g0071 1372 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Dere09g0071 1372 ProSiteProfiles Zinc finger RING-type profile. 46 85 IPR001841 -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 1149 1167 - -
Dere09g0071 1372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 122 IPR013083 -
Dere09g0071 1372 SMART ring_2 46 84 IPR001841 -
Dere09g0071 1372 MobiDBLite consensus disorder prediction 778 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0071 Dere-ChrDere09 3661703 3676972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0071 41 88 C3H Transcription Factor Family AT2G39100 35.294 3.19e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g0071 09 3661703 3676972 Dere09g0071 09 3661703 3676972 ECH