Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0060 ATGAATCGCGGAGGGTCTTTTTCGATGTCTTCAGCTGAAGGTAGTTGTGGAGGGGATGATCTGTATGAAGAACTATGGAGGGCTTGTGCGGGACCTCTTGTCGACGTTCCTCGGGTCGGCGAGAGGGTGTTCTATTTTCCACAAGGACACATGGAGCAATTGGAGGCATCAACAAATCAAGAACTAAATCATAGGATTCCGGTGTTCAAACTTCCCCCAAAGATTCTTTGTCGCGTGATGAACGTCCATTTACTGGCTGAACAGGAAGCAGACGAAGTTTATGCACAAATTACTCTGGTGCCAGAATCCAATCAATCTGAGTCTACTAGCCCAGATCCATGCCCTGCTGAACTTCCAAGGCCAACAGTTCACTCATTCTGCAAGGTCTTAACGGCATCTGATACAAGCACCCATGGTGGATTCTCTGTTCTCAGAAAACACGCCACTGAATGCCTTCCTCCTTTGGACATGTCCCAATCAACTCCGACTCAGGAATTGGTTGCCAAAGATTTGCATGGGTATGAGTGGCGCTTTAAGCATATATTCAGAGGTCAGCCACGTAGACACTTGCTTACAACTGGATGGAGTACCTTTGTTACTTCCAAGAGATTAGTTGCTGGGGACACCTTTGTGTTTTTGAGAGGGGTCAATGGGGAATTACGCATTGGAGTGAGGCGTCTTGCTCGTCAGCAGAGTAGCATGCCATCATCTGTGATTTCCAGTCAGAGTATGCACTTAGGAGTTCTTGCAACTGCTTCTCATGCTGTTGCAACCCAAACCCTTTTCATAGTATACTATAAACCAAGGACAAGCCAGTTTATCATAAGCTTGAACAAGTATTTAGAGGCTATGAACAATAAGTTTACTGTTGGTATGAGGTTCAAGATGAGGTTTGAAGGGGATGAGTCTCCTGAAACTGACAAAAGATATTCGGGCACCATAATTGGGGTGGAAGATATTTCTCCACACTGGGTAAATTCAAGTTGGCGATCACTCAAGGTTCAGTGGGATGAACCTGCTGCTGTTCCAAGACCAGATAGGGTTTCACCATGGGAAGTAGAACCCTTTCTGGCTTCTGTTACTTCATTTTTAGTTCAACCTACTGTTGTCAAGAACAAGAGACCTCGACCACCCAGTGAACTTCCAGATCTTGACACTACTTCCTCTGCCTCTGCTTTCTGGAACTCTGAGATAATGCAACCTGATATAACACAACTCGGAGTTATGGCTGAAAGCAAAAGGAGTGACAATTCTGGCATGTGGCATTATAATCAAACTGATATGAATAGTAAAAGCGGCAGCAACACTCTGTCAAGGAATCAAACAGAAGGGAGTTGGTTATCTTCTCCTCATTCTAGTAGTCCTCCACAATTGCTGCAGGACACAACAGATGATAGCAGGAGTGTCTCTGCTTGGCCTGTTCACTCAGTTCATTTGACACCTCATTCATCAAGATCGATCAATGATCATGGGCTTGATCAAGCTGGCAAGGAGAATAAAGTTGAGACTGCTACAAGCTGTCGATTGTTTGGAATTGAGCTTATTGGTCATTCCCGAAACTCAACTGCCATCAAGAATGCAGATGCGCATTCAGTGGCTGTACTTAATGGCCTTTCTGAAAGTCGTGTCAATGCCTTGTCTGGAGCAGATTCAGACCATAAATATGATATCTTAAAGGCTTCCCAGGAGGGGAAGCAGGAACTGCTGCCAGTATCACCAAAGGAGACTCAGAGCAAGCAAATATGTTCCAGAAGTCGCACCAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCAGTGGACTTGACCTTGTTGAATGGGTATGATCAACTGATAGATGAGTTGGAGGACATGTTTGACATTAAGGGACAACTTAAACTAAGGAAGAAATGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCGTGGTCTGAATTCTGTAATATGGTCAGAAGAATCTTCATTTGTTCCAGCCATGATGTGAAGAAGATGAGTACAGGAAGCAAACTGCCTATTTCCTCGATAGAAGGTGAAGGAACAGTAATAAGCGGGGACACATCCGAAATCTGA 2091 0.4476 MNRGGSFSMSSAEGSCGGDDLYEELWRACAGPLVDVPRVGERVFYFPQGHMEQLEASTNQELNHRIPVFKLPPKILCRVMNVHLLAEQEADEVYAQITLVPESNQSESTSPDPCPAELPRPTVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGVNGELRIGVRRLARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFIVYYKPRTSQFIISLNKYLEAMNNKFTVGMRFKMRFEGDESPETDKRYSGTIIGVEDISPHWVNSSWRSLKVQWDEPAAVPRPDRVSPWEVEPFLASVTSFLVQPTVVKNKRPRPPSELPDLDTTSSASAFWNSEIMQPDITQLGVMAESKRSDNSGMWHYNQTDMNSKSGSNTLSRNQTEGSWLSSPHSSSPPQLLQDTTDDSRSVSAWPVHSVHLTPHSSRSINDHGLDQAGKENKVETATSCRLFGIELIGHSRNSTAIKNADAHSVAVLNGLSESRVNALSGADSDHKYDILKASQEGKQELLPVSPKETQSKQICSRSRTKVQMQGVAVGRAVDLTLLNGYDQLIDELEDMFDIKGQLKLRKKWEIVFTDDEGDMMLVGDDPWSEFCNMVRRIFICSSHDVKKMSTGSKLPISSIEGEGTVISGDTSEI 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0060 696 SMART B3_2 126 228 IPR003340 GO:0003677
Dere09g0060 696 FunFam Auxin response factor 287 360 - -
Dere09g0060 696 Pfam AUX/IAA family 567 620 IPR033389 -
Dere09g0060 696 Pfam AUX/IAA family 630 668 IPR033389 -
Dere09g0060 696 SUPERFAMILY DNA-binding pseudobarrel domain 117 255 IPR015300 -
Dere09g0060 696 MobiDBLite consensus disorder prediction 417 469 - -
Dere09g0060 696 Gene3D - 287 361 - -
Dere09g0060 696 FunFam Auxin response factor 124 228 - -
Dere09g0060 696 Gene3D - 580 672 - -
Dere09g0060 696 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Dere09g0060 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere09g0060 696 Pfam Auxin response factor 252 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere09g0060 696 Gene3D - 123 227 IPR015300 -
Dere09g0060 696 FunFam Auxin response factor 579 672 - -
Dere09g0060 696 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Dere09g0060 696 SUPERFAMILY CAD & PB1 domains 585 660 - -
Dere09g0060 696 CDD B3_DNA 124 226 IPR003340 GO:0003677
Dere09g0060 696 ProSiteProfiles PB1 domain profile. 584 665 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0060 Dere-ChrDere09 3537101 3540739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0060 17 677 B3 DNA Binding Superfamily AT4G23980 59.789 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere09g0060 AUX_IAA 1.4e-06 CL0072