Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0059 ATGAAATCAGATCCCATAACTCAATCCAATCTTTCTTCACGGGTTTCGTTAATCCACGTCATCAATCAGCTGGAGCAGCTGTCGTTCTGCGTGGGTGCCGCCGCCTGCGAAGGTCGTGAGCCACACGCTCCTCCTCCCCCCTTCTCAAAGGTTCATGATTCTTTTGGAAGCTTGAGCCAGTTGATTCCTTCTCTGTGTTGCCTGACCCAGCCTCAAAGACAGCAACTCATAAAGATCAGTGACGTGTATGAACAAAACCATAAAGAAATATTGGTTTTGAGTTGCGGGCTGCTTGTCGCTGGAAGAGTCACGGACATAGAGGTTCTTAACAGAGGAGTTATTCCGCTGGCATATAGCATCAAGAAGAGAAACGAGACCGGGGGGGCTAACAGGTACCTGGATGTCATCTGCCTTCTATTAACCTTCTTCACAAAGCCTGAGTCCTTGGACTTTCTTGAGGAGACAGTAAAAGCTGATGATGATGATATCCGATCAACGAGTTTCAAAGTTAAGAAAGGAAATATTAGGCTTTTTATTTTCTTCCCCTTGTTCCTTCCAACTCAACAAGTGGAGTGGAGTGAAGAAGGAATTGCAATGGGTGTTCCACAAACTCCAAGCACTGCTCCAAATCTGTATCCGCAAGAACTTCAGCTAAAACTATACCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTTCTCTTGTTTTACTTGTTTTACCTCAAGCGCAGGGCTTCCTCTCTCTCTTCTCCTCCCCACTTCCTTCCCACCACTCCACCAACTACCTATCATTCCTCACCTTGTCGTTTGGATCTGACGCTGCAGTTCCTTGACGCACTTCCGAAAATTTTATTTGATGAGGAATTGAAAGCAAGAGATTCACAATGCTGTGTATGTCTGGGAGAATTTGAGATGAAAGAAGAGGTGGTACAGATCCCTTATTGCAAGCATGTATTTCACAGGGAATGCATATCTCACTGGCTCCATTCAAACTCCACTTGTCCACTTTGTAGATGTTGTATCATCCCAAACACCAAGTTTCTTAATCCACCACCTCTCCATCCTCCTATTGTAGATGAAGCCGTTGCTTCCAACTGA 1110 0.4505 MKSDPITQSNLSSRVSLIHVINQLEQLSFCVGAAACEGREPHAPPPPFSKVHDSFGSLSQLIPSLCCLTQPQRQQLIKISDVYEQNHKEILVLSCGLLVAGRVTDIEVLNRGVIPLAYSIKKRNETGGANRYLDVICLLLTFFTKPESLDFLEETVKADDDDIRSTSFKVKKGNIRLFIFFPLFLPTQQVEWSEEGIAMGVPQTPSTAPNLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPPHFLPTTPPTTYHSSPCRLDLTLQFLDALPKILFDEELKARDSQCCVCLGEFEMKEEVVQIPYCKHVFHRECISHWLHSNSTCPLCRCCIIPNTKFLNPPPLHPPIVDEAVASN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0059 369 CDD RING-H2_EL5-like 299 342 - -
Dere09g0059 369 SUPERFAMILY RING/U-box 278 354 - -
Dere09g0059 369 ProSiteProfiles Zinc finger RING-type profile. 300 342 IPR001841 -
Dere09g0059 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 205 352 - -
Dere09g0059 369 SMART ring_2 300 341 IPR001841 -
Dere09g0059 369 Pfam Ring finger domain 299 342 IPR001841 -
Dere09g0059 369 Gene3D - 72 176 IPR014717 -
Dere09g0059 369 SUPERFAMILY Ribosomal protein S6 82 172 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Dere09g0059 369 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 269 347 - -
Dere09g0059 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 346 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0059 Dere-ChrDere09 3528832 3535056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0059 201 347 C3H Transcription Factor Family AT4G10150 41.333 3.16e-34 124