Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0047 ATGACAGAAGTGGCGAGCTCAGTGGTGCACGAGGTTCTGGGACGACGGGTTGAGGATGTAGATCAGCCTATTATTGATTATATTATCAACGTTCTCGCAGACGAAGACTTTGATTTTGGAGTTGATGGAGAAGGCGCCTTCGAATTTCTTGGAGAGCTACTCGTCGGTGCCGGCTGTGTCGATGACTTCTCTGAGTGTCGCTCGGTATGTAGCAAATTGTCTGAAAAGTTTGGAAAGCATGGGTTGGTCAAAGCCAAACCAACCGTGCGCAGTCTTGCAGCGCCCTTCAGAATGAATGACGGGATGGATGATGGGGAAGCTCCGAAGAAGAAGCCTGAGGCTACTGATGGTCCTTTGCTATCTGAACGTGACCGAGCAAAGCTAGAAAGAAGAAAGAGGAAGGAGGAACGCCAGAGGGAGGCACAGTACCAAATGCATCTAGCGGAAATGGAAGCAGCCCGAGAAGGGATGCCTGTTGTATGTGTTAGGCATGATAATAGTGGTGGACCAGCTGTCAAGGACATTCACATGGAGAACTTCAATATTTCTGTTGGTGGCCGTGATCTCATTGTGGATGGTTCTATCACACTTTCATTTGGAAGGCATTACGGCCTTGTTGGAAGAAATGGTACTGGGAAAACAACATTCCTCAGGCATATGGCTATGCATGCCATTGATGGTATACCAAATAATTGTCAGATATTGCACGTGGAGCAAGAGGTAGTTGGTGATGATATAACAGCATTGCAGTGTGTTCTCAATTCTGATATTGAGAGAACTCAACTTCTAGAGGAGGAAGCCCGTTTACTTGCCCAACAGAGAGAGTTGGAGACTGGGGATGTAAATGAAAAGAGTAATGGTAATCTGAATGGCGCAGTTGACAGAGATGCTAATTCACAAAGACTCGAGGAAATATACAAGAGGCTTGAGTTGATTGATGCTTATTCTGCAGAGTCACGTGCAGCTTCAATACTTGCTGGCCTAAGCTTCTCTTCTGATATGCAAAAGAAAGCAACAAAAACTTTTTCTGGTGGATGGAGGATGCGAATAGCTCTTGCTCGTGCACTATTTATAGAGCCTGATTTGTTGCTTCTTGATGAACCTACAAACCATCTTGATCTTCATGCTGTCTTATGGTTGGAGTCTTACTTGGTTAAGTGGCCAAAAACATTTATAGTTGTTTCTCATGCTAGAGAATTCTTAAACACGGTGGTTACTGACATAATACACCTACAAGGCCAAAAGCTGACTACTTATAAAGGGAATTATGATACTTTTGAGAGAACTCGAGAAGAACAGCTTAAAAACCAGCAAAAAGCATTAGAGGCAAATGAACGTGCAAGAGCTCATATGCAGTCTTTCATTGACAAGTTCCGCTATAATGCCAAAAGGGCATCACTTGTTCAATCAAGAATCAAGGCTTTGGATCGGATGGGTCATGTAGATGAAATTATCAATGATCCTGACTACAAGTTTGAGTTCCCAACTCCAGATGATAGACCTGGCGCACCAATAATAAGTTTCAGTGATGCATCATTTGGTTACCCTGGAGGCCCCCTTCTGTTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGTCCAAATGGCATTGGCAAATCTACTATACTTAAGTTAATTGCAGGGGAACTACAACCCAGTTCTGGGACCGTTTTCCGTTCTGCCAAGGTTCGTATAGCAGTGTTCAGCCAGCATCACGTTGATGGCCTAGACTTGTCTTCAAATCCTCTTTTGTACATGATGCGCTGCTACCCTGGAGTTCCTGAACAGAAGCTTCGAGCTCACTTGGGTTCTTTCGGTGTAACTGGAAATCTTGCACTTCAGCCCATGTACACACTGTCAGGTGGCCAAAAAAGCAGGGTTGCATTTGCAAAGATAACTTTCAAGAAACCACATATCATATTGCTTGATGAACCATCCAATCACCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTGATGTTCCAAGGCGGCATTCTAATGGTGAGTCACGATGAGCACCTAATATCTGGAAGCGTTGAGGAATTATGGGTTGTATCCCAAGGGAAAGCGACCCCTTTCCACGGCACATTCCAAGACTATAAAAAGATACTCCAGTCATCATAG 2151 0.4417 MTEVASSVVHEVLGRRVEDVDQPIIDYIINVLADEDFDFGVDGEGAFEFLGELLVGAGCVDDFSECRSVCSKLSEKFGKHGLVKAKPTVRSLAAPFRMNDGMDDGEAPKKKPEATDGPLLSERDRAKLERRKRKEERQREAQYQMHLAEMEAAREGMPVVCVRHDNSGGPAVKDIHMENFNISVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPNNCQILHVEQEVVGDDITALQCVLNSDIERTQLLEEEARLLAQQRELETGDVNEKSNGNLNGAVDRDANSQRLEEIYKRLELIDAYSAESRAASILAGLSFSSDMQKKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQGQKLTTYKGNYDTFERTREEQLKNQQKALEANERARAHMQSFIDKFRYNAKRASLVQSRIKALDRMGHVDEIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSQGKATPFHGTFQDYKKILQSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0047 716 ProSitePatterns ABC transporters family signature. 342 356 IPR017871 GO:0005524|GO:0016887
Dere09g0047 716 Pfam ABC transporter 523 653 IPR003439 GO:0005524
Dere09g0047 716 Coils Coil 125 145 - -
Dere09g0047 716 CDD ABCF_EF-3 506 698 - -
Dere09g0047 716 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 155 715 - -
Dere09g0047 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 506 715 IPR003439 GO:0005524
Dere09g0047 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 439 IPR027417 -
Dere09g0047 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 707 IPR027417 -
Dere09g0047 716 FunFam ATP-binding cassette sub-family F member 3 468 716 - -
Dere09g0047 716 MobiDBLite consensus disorder prediction 94 139 - -
Dere09g0047 716 Pfam ABC transporter 409 489 IPR032781 -
Dere09g0047 716 Pfam ABC transporter 194 370 IPR003439 GO:0005524
Dere09g0047 716 FunFam ABC transporter F family member 3 127 451 - -
Dere09g0047 716 MobiDBLite consensus disorder prediction 102 139 - -
Dere09g0047 716 Gene3D - 125 451 IPR027417 -
Dere09g0047 716 Gene3D - 469 716 IPR027417 -
Dere09g0047 716 CDD ABCF_EF-3 175 415 - -
Dere09g0047 716 ProSitePatterns ABC transporters family signature. 625 639 IPR017871 GO:0005524|GO:0016887
Dere09g0047 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 438 IPR003439 GO:0005524
Dere09g0047 716 SMART AAA_5 531 698 IPR003593 GO:0016887
Dere09g0047 716 SMART AAA_5 199 416 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0047 Dere-ChrDere09 3387038 3394769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0047 468 667 Calmodulin-binding Proteins AT2G36910 26.724 5.78e-11 64.3