Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0041 ATGGACACTCGGTGGCCTCAGGAGATAGTGGTGAAACCAATAGAAGAGATAGTGGCAAATACAAATACAAATACATGTGGGAAGAGTGGAGGTGTGGAGAGGAAGGCAAGGCCCCAGAAAGAAGAAGCCCTAAACTGTCCGAGGTGCCATTCAACCAACACCAAGTTCTGTTACTACAATAACTACAGCCTCACACAGCCTCGATATTTCTGCAAGACTTGTCGGAGGTATTGGACTCAAGGTGGTTCCCTCAGAAACATCCCCGTGGGAGGAGGTTCCAGGAAGAACAAGAGATCTTCGTCTTCTTCTAATTCTTGCTCCAAAAAGCTTCCTCCCGAGGATCCGACTTTGTCGCACATAGTTCATTCCTCTCACACACACAGCCCTAAGATTCTGCAAGGCCAAGATCTGAATCTGGGGTTCCCAGAGTTTGGTAATATTCGTGATCCACTGGTTCAAGTAAATGAAAATACCAACATCAACAACATGTGTGCTTCTTCATCGACGAGTAGCAGTTGCCAGCTTTCAGCGATGGAGCTTCTAAGTGGGATATCGTGCAGTTCCAAGGGTTTGCCTATGGGGTCCATTCATCAGGATCCCAATACAGTTTTCCCTCTTCATTCTGCCTCAACCCCCTACCCTACGCTACACAACCTTCAACACAGTACTGCCAACCTTTCCTTTCCCTTTCAAGATTTGAAACAAGTGTCTGCTCCCTCTCACAATTCAACCTCCACTGGTTATTGGACTGCAATGTTGGGTGCATCCGGAGGATCTAATTGGTAA 786 0.4695 MDTRWPQEIVVKPIEEIVANTNTNTCGKSGGVERKARPQKEEALNCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSLRNIPVGGGSRKNKRSSSSSNSCSKKLPPEDPTLSHIVHSSHTHSPKILQGQDLNLGFPEFGNIRDPLVQVNENTNINNMCASSSTSSSCQLSAMELLSGISCSSKGLPMGSIHQDPNTVFPLHSASTPYPTLHNLQHSTANLSFPFQDLKQVSAPSHNSTSTGYWTAMLGASGGSNW 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0041 261 MobiDBLite consensus disorder prediction 93 111 - -
Dere09g0041 261 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Dere09g0041 261 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 187 IPR045174 GO:0003700|GO:0006355
Dere09g0041 261 MobiDBLite consensus disorder prediction 85 129 - -
Dere09g0041 261 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Dere09g0041 261 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0041 Dere-ChrDere09 3342925 3344201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0041 1 157 C2C2-Dof Transcription Factor Family AT4G24060 54.696 7.38e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere09g0041 zf-Dof 2e-33 No_clan