Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0040 ATGGCTGGTTCCAACGACATGGACAATAAGGAGATTAAGCAATCCGAAAGCAAGGTTTCATTGGGAAATAACAATAATGGTGTGAAGAATTTACATGGGTTTCTCCCACAACATGTGGACAAGTGGAGTAGGAGAAGAAGCTGGCACAAGATCAGCGATGACATGGCAGAGAAGGAGAATATTAACGACGCATGCTTGAGATGTAAAGACCCAATGCCCTCCTCTCGTAGGGCAAAGCATGTTTTCCACATAAAAAGCGACAAGGCTTTAGCTGAGGCGCATTTCCATTTTGACATTTTAATTGAAAAGACCCAAGCGATGATGATGATTGATGATAGCAGAATTGGTGATGTCATCCATTCCATTGCGGAAAGTGCAATATCCAAAACAGGGAAGAATGGATGTAGTTGAGTCTCAACCTTATATCTGCTTGATTCCGGAGATGGGTACCAGGTGCCTCAGATGAGAATTAGTGAACTGGGTGAGCCTCAGATGGGTTCGGATTTAAGGAATACGCTCAAATGCCTTTGTTGTGCTCATGGCTGGTCTTACGCCGTTTTCTGGCGCTTTCATCCTCCTAATTCTTTGTTGCTGACCGTGGAAGATGCTTACTACGAAGGGCAATTGGGACAAGAGATTGCTAATATGCTCCCACAATTCCAATTCCTGGGTGAAGGAATTGTTGGTCAAGTTGCTTGTACTGGCAAGTCTAGATGGATGCTCTCAGATGCTCATACGGGAGAATGGAATAATACGGGTGTTTTTGGAGGTCAAGATCATTTTGAGGATGATTCTGAATTGCGTCAACAATTCTCATCTGGCATAAAGACAATTGCAGTGATATCTGCAGAACCAAGGGGGGTAGTACAATTTGGATCCACGCAGAAGATCTTGGAAAGAGAGGAAGTTTTGGAACAAACACAAAGACTGCTCATGGGGACTGAAAATGTTGATAAGGTTGATGCATCATCAGATACAGTTTTCCCATGGGATATTGAGAATTATGATCTGAATGGGTTGTTGGCCTCTGAAAACTTATGTTTTTGGAATCTCAATTCTGATGATGACACCAAAGAGCTACTGAGAAATGCTTATTTTTCTGCTAGTGTGGATAATTCATTCTCTCCCACGTACAAGAATCATGAAGAAGGAAAGACCAGCTTGCATGGGGAATCTTCTTGTCTTAGTGACCAATTGGCAACTGCCGCAGAAGCTCAAATAGCATTATCCGACAGGGCTAGTTTTGATGTGCTTTTGAAGCCAAACTCTTGTGTGAACAACCCCTGTTTTGGCACATGGGATGGCGAAGTTTCTTTCGCTTCATCAAGGGCCCAGGATGTTACTGTTGAGGATTCAGCATTGACATCTTTATGCAACATGAACAGAAGAGTGCCTGGACCAGTAGGGACATTTCAAGACAAATATGGGAATTCACAGAACTACCAACCTTCTACTCAATCATTACACAGAGTGTTTAAGGTGTCGGAGGAGGACTTGTCTGAGTTTTGCTCCATGGATGACCTTTGCCAGTGGTTTGCACATTCTCCAGAGCATAGCATCTGCGCAACAACAACTGCATTGGATAATTGTCTTTCTCAACCCATACAGTTTGATCCCACATGTGTTGCCTTCAGTAGTGATCCGATCAAAAGTCTTTCGGATGGGTACCAAACATCTGCCCTTGTGCATAGTTCTGAAAGTAGAACAACACTTGGTTTTGTTGGTGAGTGCTGGGAGAATATCATTGCACCAGTGGTGAATGCTGCTACTGACACTGCTTCATCTGAATGCACATCAGAGTTGAGTACTGCTACTTTTACCGCTTCTAAAAAGGGCTTATTCTCGGAGCTAGGCATTGAAGAGCTTTTGAATGGTGGATCGAGTTTTGAGGATCAAATATCTTCTACTAAAAGGCGGAGGACAGAATATTCACCCATGAGTACTAGTTCTGTTTCTAATTTGGACAAGACAAACAACCTTGTACACAAGAAAGAGCCATTCCCTAAATCACAGGTAAGCTTGTGGATCAATCATAGTCATTGCATCAACAGCGGGAGGGTTATCCCTAAAAGGCCAGAGGAGTCCACAAAGGCTGCCAGGAAGAGGGCTAGGCCAGGGGAGACTACTCGACCTCGACCAAAAGATCGTCAGCAGATCCAGGACCATATTAAAGAGTTGAGAGGGGTCATCCCCAATGGTGGAAAGTGTAGCATTGATTCTTTGTTGGATCGCACCATCAAATACATGCTTTTCTTACAAAGCATCACAAAATATGCAGACAAGCTGCAAGAACCCAAAAATCCCAAGCTGATTGAGGAGGCAAATGGTGCGGTTGCGAAGGACAAAAGTGTGGGAGAATCAGATAGTGAAGGTGGTGGCGGCGTTACATGGGCATTTGAAGTTGCAGGTCAAACAATGGTATGCCCGATTATAGTTGAGGACATGAACCCACCTGGCCAAATGCTCATAGAGATGCTTTGTGAGGAGCAGGGTTTGTTCCTTGAGATAACAGAAATGATTCGGGATTTTGGATTGAATATATTGAGAGGAAAGATGGAAATCAGGGAGAACAAGTTATGGGGATGCTTTATTGTCGAGGCGAATAGACAAGTAACAAGGATAGATGTATTTTGGTACTTGGTACAGCTTATACAGCAAGCAAACACTTCTGGAATGAATTGTTATCAGAAAACAGATATGGCAGTTCCTGTTGCCATGACGAAATTAAACAATCCTGCGGTGTATGGAAAGGAAGTTGAAAGAAATCCCCAGGAATTGGTATCGCAATTGGACTTCATTCTTCTTGGAAGTTGCTCTTTCGAATTCGCCTCTGTTCTCGATTCTAAAAGCGACCTTCGTTTCATTCTCATCGCAATCGATATGGTTGATGCAGCCGATAAATTGGTGTATTTCCAAGCGATCACAGGTCTAGAAGATCCCGACCTATGCACAGAGATTCTCGCAGCCCATGGCTGGGACCTAGAACTCGCGATCTCCTCCTTCACCTCCGCTAACTCCAACCCCCCGCACCCAGACACGTCCGCAGTCGCCGACATTGACGCCTCCTCTGTCGGTCGTGTCGATTTGCAGCCATCAGAACCTTCTCCTCCTGGCTTGGCTTGGAAGCTCATCAAGTTACCTGTCTCTGTCATTTCTGGTAGTTTAGGCTTAATTTCTGGCGCGATTGGGTTCGGCTTTTGGGCCGCCGGTGGCGTGCTTTCCTATTCGCTCGGCATGATAGGGTTGGGCTCCGGTTCCACCAGGAACGATCAGTCCTCCGCGCGTTTGATTCCCGTTTCGGCAGCGGCATCGGAGGCTATGGATTTTGTGGCAGGGTTTGAGAGGGAATACGGCACCGCTCGGCCTAATTTTGTGACCGAGGGCTTTATGGACGCGCTACAAAGGTCAAGGAATGCCTTTAAACTTCTATTTGTTTACTTGCATTCACCAGAGCATCCGGATACGCCTTTATTCTGTGAGAGGACTCTGTGCTCGGAGACTCTCGTGGCGTTTGTAAATGACAATTTCGTGTCGTGGGGAGGTAGTATTCGGACTAGTGAAGGGTTTAAGATGAGTAACAGCTTGAAGGCTTCTCGGTTTCCATTTTGTGCTGTAGTCATGGCGGCAACAAATCAGAGGATTGCACTGCTTCAACAGGTTGAGGGCCCCAAATCCCCTGAGGAGATGCTTATGATACTACAGAGAGTGCTTGAAGAAAGTTCCCCAGTTCTTCTTGCAGGAAGGCTTGATGCAGAAGAAAGACAAAATAATATTCGCTTAAGGGAGGAGCAAGATGCTGCTTACAGAGCTGCTCTTGAAGCTGATCAAGCTAGGGAACGGCAGAGGAGAGAAGAACAAGAACGTCTTGAAAGGGAAGCTGCTGAAGCTGAGAGGCTGCGCAAGGAGGAAGAGGAGGCTCAAGAAAGGGCAGCACGAGAAGCTGCAGAGAAGCAGTCTGCATTAGCCAAGATGCGTCAGGAAAAAGCCCAGTCACTTGGTGAAGAACCTGAGAAAGGACCTAATGTTACACGGGTTTTGATTCGGTTTCCGAATGGTGAACGCAAGGAAAGGAGGTTCCACAACACAGTGACAATTCAATCTTTATATGACTATGTTGAGTCATTGGGTTGTTTAGAAGCTGAGAGTTACAGTCTGGTGTCCAACTTTCCTCGGGTTGTTTATGCACAAGAAAAGCTTACACTGTCATTGGATGAAGCAGGATTGCATCCTCAGGCCAGCCTGTTTGTAGAGCTCAATTCATGA 4263 0.4546 MAGSNDMDNKEIKQSESKVSLGNNNNGVKNLHGFLPQHVDKWSRRRSWHKISDDMAEKENINDACLRCKDPMPSSRRAKHVFHIKSDKALAEAHFHFDILIEKTQAMMMIDDSRIGDVIHSIAESAISKTGKNGCSXVSTLYLLDSGDGYQVPQMRISELGEPQMGSDLRNTLKCLCCAHGWSYAVFWRFHPPNSLLLTVEDAYYEGQLGQEIANMLPQFQFLGEGIVGQVACTGKSRWMLSDAHTGEWNNTGVFGGQDHFEDDSELRQQFSSGIKTIAVISAEPRGVVQFGSTQKILEREEVLEQTQRLLMGTENVDKVDASSDTVFPWDIENYDLNGLLASENLCFWNLNSDDDTKELLRNAYFSASVDNSFSPTYKNHEEGKTSLHGESSCLSDQLATAAEAQIALSDRASFDVLLKPNSCVNNPCFGTWDGEVSFASSRAQDVTVEDSALTSLCNMNRRVPGPVGTFQDKYGNSQNYQPSTQSLHRVFKVSEEDLSEFCSMDDLCQWFAHSPEHSICATTTALDNCLSQPIQFDPTCVAFSSDPIKSLSDGYQTSALVHSSESRTTLGFVGECWENIIAPVVNAATDTASSECTSELSTATFTASKKGLFSELGIEELLNGGSSFEDQISSTKRRRTEYSPMSTSSVSNLDKTNNLVHKKEPFPKSQVSLWINHSHCINSGRVIPKRPEESTKAARKRARPGETTRPRPKDRQQIQDHIKELRGVIPNGGKCSIDSLLDRTIKYMLFLQSITKYADKLQEPKNPKLIEEANGAVAKDKSVGESDSEGGGGVTWAFEVAGQTMVCPIIVEDMNPPGQMLIEMLCEEQGLFLEITEMIRDFGLNILRGKMEIRENKLWGCFIVEANRQVTRIDVFWYLVQLIQQANTSGMNCYQKTDMAVPVAMTKLNNPAVYGKEVERNPQELVSQLDFILLGSCSFEFASVLDSKSDLRFILIAIDMVDAADKLVYFQAITGLEDPDLCTEILAAHGWDLELAISSFTSANSNPPHPDTSAVADIDASSVGRVDLQPSEPSPPGLAWKLIKLPVSVISGSLGLISGAIGFGFWAAGGVLSYSLGMIGLGSGSTRNDQSSARLIPVSAAASEAMDFVAGFEREYGTARPNFVTEGFMDALQRSRNAFKLLFVYLHSPEHPDTPLFCERTLCSETLVAFVNDNFVSWGGSIRTSEGFKMSNSLKASRFPFCAVVMAATNQRIALLQQVEGPKSPEEMLMILQRVLEESSPVLLAGRLDAEERQNNIRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERLRKEEEEAQERAAREAAEKQSALAKMRQEKAQSLGEEPEKGPNVTRVLIRFPNGERKERRFHNTVTIQSLYDYVESLGCLEAESYSLVSNFPRVVYAQEKLTLSLDEAGLHPQASLFVELNS 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0040 1420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 716 758 IPR036638 GO:0046983
Dere09g0040 1420 Gene3D - 1339 1418 - -
Dere09g0040 1420 MobiDBLite consensus disorder prediction 1270 1334 - -
Dere09g0040 1420 CDD UBX 1344 1417 - -
Dere09g0040 1420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 703 752 IPR011598 GO:0046983
Dere09g0040 1420 Pfam UBA-like domain 966 1004 - -
Dere09g0040 1420 MobiDBLite consensus disorder prediction 690 716 - -
Dere09g0040 1420 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 169 208 IPR025610 -
Dere09g0040 1420 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 213 309 IPR025610 -
Dere09g0040 1420 ProSiteProfiles UBX domain profile. 1338 1416 IPR001012 GO:0005515
Dere09g0040 1420 MobiDBLite consensus disorder prediction 16 31 - -
Dere09g0040 1420 CDD UAS 1124 1239 - -
Dere09g0040 1420 Gene3D Glutaredoxin 1097 1244 - -
Dere09g0040 1420 Pfam UBX domain 1338 1417 IPR001012 GO:0005515
Dere09g0040 1420 Gene3D - 962 1010 - -
Dere09g0040 1420 SUPERFAMILY Thioredoxin-like 1103 1244 IPR036249 -
Dere09g0040 1420 SMART 45neu3 1108 1234 IPR006577 -
Dere09g0040 1420 MobiDBLite consensus disorder prediction 1 33 - -
Dere09g0040 1420 SUPERFAMILY Ubiquitin-like 1301 1417 IPR029071 -
Dere09g0040 1420 SMART ubx_3 1336 1418 IPR001012 GO:0005515
Dere09g0040 1420 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 165 901 IPR043561 GO:0003700|GO:0006355
Dere09g0040 1420 MobiDBLite consensus disorder prediction 686 716 - -
Dere09g0040 1420 Coils Coil 1269 1327 - -
Dere09g0040 1420 MobiDBLite consensus disorder prediction 1270 1341 - -
Dere09g0040 1420 CDD UBA_FAF 971 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g0040 Dere-ChrDere09 3323546 3340141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0040 619 905 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 41.558 1.14e-65 234