Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g0007 ATGCTGAATGAAAGCACAAATGGAGATGGTGCCACAGATGGGGTTGATGTGCTTGAAATTGGGAAGCAGGGTCCTCGAGAGGGTGGCCAACGTAGCTTACATGGTGTTGAGGAAGTAATAACTGTTGTGGTTTCCCCAAATAAGGGCTACTTGTCCAGGTCTGGAAGTTCCCACGAACAATGCAGGATATGTCAGCAAGAGAAAGAAGAAAGTCTGATGGATCTTGGATGTCGATGTCGAGGTGGACTGGCAAAAGCACACCGGACATGCATAGAAACCTGGTTTCTTACAAGAGGATCAAACCATTGTGAGATCTGCCAGCAAGTAGCTCTGAATGTGTCACCTCCAGAATCCCAGCCAAATCAGAATGACTACTGGGTATGGAGGATTCACCCATCAATTATGGCACAGGATCGTGAAAGGGGCTGTTTTAGTCCTCTTTGGGTGGCATTTTCAATTCTCATTGGTGGTCTCTTGTTGGATGTGCTCTTTTCCATCACCTTTGGTGTCTCTGCACTACCTGTAAATATAATAATTGGTGTTATTATTGTGCTAGGACTTGGCACTGCACTTCGGCTGGCCCTGGAATTCTGCCATGAGTGGAATTTGAGAAGAGTTGTGCAGAGGGTGGAAACAAATGTGAATCATTCGTACCACCCTGCTTTGTAA 669 0.4604 MLNESTNGDGATDGVDVLEIGKQGPREGGQRSLHGVEEVITVVVSPNKGYLSRSGSSHEQCRICQQEKEESLMDLGCRCRGGLAKAHRTCIETWFLTRGSNHCEICQQVALNVSPPESQPNQNDYWVWRIHPSIMAQDRERGCFSPLWVAFSILIGGLLLDVLFSITFGVSALPVNIIIGVIIVLGLGTALRLALEFCHEWNLRRVVQRVETNVNHSYHPAL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g0007 222 SMART ringv_2 60 107 IPR011016 GO:0008270
Dere09g0007 222 MobiDBLite consensus disorder prediction 1 31 - -
Dere09g0007 222 ProSiteProfiles Zinc finger RING-CH-type profile. 53 113 IPR011016 GO:0008270
Dere09g0007 222 Pfam RING-variant domain 61 106 IPR011016 GO:0008270
Dere09g0007 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 109 IPR013083 -
Dere09g0007 222 PANTHER ZINC FINGER, RING-CH-TYPE 37 178 - -
Dere09g0007 222 CDD RING_CH-C4HC3_MARCH 61 107 - -
Dere09g0007 222 SUPERFAMILY RING/U-box 56 109 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g0007 59 113 C3H Transcription Factor Family AT2G37950 51.724 3.33e-12 61.6