Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g2446 ATGAGTAGCACACGGAAGGCCAACAAAGAGAGGAATGCCGAGAGAGATCCCAACAAACCGAAAAGACCACCTAGTGCTTTTCTCGTCTTCCTCCAGGAGTTCAGAAAGACCTTCAAGGCAGAAAATCCTAACGTGAAGGCTGTATCCGCTGTTGGGAAGGCTGGAGAAGAGAAATGGAAATGCCTGGCTATTGGAGTCCCTGGGGATAGTAGTATGGTTGACCACGACATCACCCTCAGTGGGAAAACTACTGGAGAAGCTGGAGCAGAAGTTGCCCTCCTGAACCATGTTCATCTCAAAAAAATCCATCTTTGTCTACCCTCTCTTCCATCTCATTACTCAGTTTTTTCTCTCTGCTCTTCTTTCCAGCTTCTCGGTTTCTGCTTCAGTTTTCTGCTCTCTCGGTTTCTGCTTCAGCTTCTCTCGGTTCTCCTCTAA 438 0.4749 MSSTRKANKERNAERDPNKPKRPPSAFLVFLQEFRKTFKAENPNVKAVSAVGKAGEEKWKCLAIGVPGDSSMVDHDITLSGKTTGEAGAEVALLNHVHLKKIHLCLPSLPSHYSVFSLCSSFQLLGFCFSFLLSRFLLQLLSVLL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g2446 145 MobiDBLite consensus disorder prediction 1 21 - -
Dere08g2446 145 SUPERFAMILY HMG-box 8 62 IPR036910 -
Dere08g2446 145 SMART hmgende2 19 82 IPR009071 -
Dere08g2446 145 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 20 62 IPR009071 -
Dere08g2446 145 Gene3D High mobility group box domain 12 68 IPR036910 -
Dere08g2446 145 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 62 IPR031061 -
Dere08g2446 145 MobiDBLite consensus disorder prediction 1 24 - -
Dere08g2446 145 Pfam HMG (high mobility group) box 20 62 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g2446 Dere-ChrDere08 31467557 31468471 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere08g2446 HMG_box 1.6e-12 CL0114