Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1952 ATGGGAACGAGCTGGCAGCTGCATAAAAAAAGCTGGAAAGAGAAAAACGACAGAAGCTTTGAGAGAGAAAGGGTTAAGTGCACTCCTGCTTATTCTGATACAGTTTTGGAGTCTGCTTTGCTCCTGTCAGCTGCTCCTGCATTTCCCTACGCTCATCCTCTTTTCACTGCACATTTCCTTTTGGTGTGGTGGGGAGAGCTGGAGGGGAAGAACGAAACTGAAGCTAGAGCCGAGAGAAAGAAGAGGAGTGAACCGAGGAAAAAAGCAGAAGGGCGGAGGAGAGAGAAAGCTCTGCCACCTTTGTTGAAGAGAGAGACCCGAATAAAGCAGATAATGCAAGCAGATGAAGATATTGGAAAAATAGCATTAGCCGTGCTTGTTTTAGTTTCCAAAGCTCTTGAACTATTTTTGCAAGATCTTTGTGACCATACTTATGACATAACTCTTCGTAGAGGAGCAAAGACCATGAGTGCATTGCATTTAAAGCATTGTGTACAAAGCTATAATGTCTTTGATTTCCTGAGGGATATCGTGAGCAGGGTGCCTGATTATGGTCATGGGCATGGGCATGGGCATAGGCATTCTGAATCTGGTGCTGATGGTTGA 606 0.4488 MGTSWQLHKKSWKEKNDRSFERERVKCTPAYSDTVLESALLLSAAPAFPYAHPLFTAHFLLVWWGELEGKNETEARAERKKRSEPRKKAEGRRREKALPPLLKRETRIKQIMQADEDIGKIALAVLVLVSKALELFLQDLCDHTYDITLRRGAKTMSALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHGHRHSESGADG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1952 201 SUPERFAMILY Histone-fold 112 181 IPR009072 GO:0046982
Dere08g1952 201 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 84 187 - -
Dere08g1952 201 MobiDBLite consensus disorder prediction 74 97 - -
Dere08g1952 201 FunFam dr1-associated corepressor homolog 97 180 - -
Dere08g1952 201 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 106 165 IPR003958 -
Dere08g1952 201 Gene3D Histone, subunit A 84 180 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1952 Dere-ChrDere08 29283089 29283770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1952 107 192 CCAAT-HAP5 Transcription Factor Family AT3G12480 80.233 4.63e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere08g1952 CBFD_NFYB_HMF 1e-14 CL0012