Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1950 ATGGTTTTGGAGTCTGCTTTGCTCCTCTGCTCCTGCATTTCCCTACGCTCCTCCTCTTTTCACTGCACATTTCCTTTTGGTGTGGAGGGGAAGAATGGAACTGAAGCTAGAGCCGAGAGAAAGAAGAGGAGTGAACCGAGGAAGAAAGCAGAAGGGCAAAGGAGAGAGAAAGCTCCGCCACCTTTGTTAGCTCAATTGGAAAACAGAGATGGAAAGGGGGAGAGAGAGACTCGGATAAAGAAGATAATGCAAGCAGATGAAGATATTGGAAAAATAGCATTTGCAGTGCTTGTTTTAGTTTCCAAAGCTCTTGAACTATTTTTGCAAGATCTTTGTGACCATACTTATGATATAACTCTTCGTAGAGGAGCAAAGACCATGAGTGCATTGCATTTAAAGCATTGTGTACAAAGCTATAATGTCTTTGATTTCTTGAGGGATTTCGAGAGCAGGGTGCCTGATTATGGTCATGGGCATAGGCATTCTGAATCTGGTGCTGATGATTGA 507 0.432 MVLESALLLCSCISLRSSSFHCTFPFGVEGKNGTEARAERKKRSEPRKKAEGQRREKAPPPLLAQLENRDGKGERETRIKKIMQADEDIGKIAFAVLVLVSKALELFLQDLCDHTYDITLRRGAKTMSALHLKHCVQSYNVFDFLRDFESRVPDYGHGHRHSESGADD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1950 168 MobiDBLite consensus disorder prediction 33 56 - -
Dere08g1950 168 MobiDBLite consensus disorder prediction 33 75 - -
Dere08g1950 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 77 136 IPR003958 -
Dere08g1950 168 SUPERFAMILY Histone-fold 83 149 IPR009072 GO:0046982
Dere08g1950 168 Gene3D Histone, subunit A 76 151 IPR009072 GO:0046982
Dere08g1950 168 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1950 Dere-ChrDere08 29143452 29144047 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1950 78 168 CCAAT-HAP5 Transcription Factor Family AT3G12480 74.194 2.20e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere08g1950 CBFD_NFYB_HMF 4.7e-15 CL0012