Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1925 ATGATGGGCAGAACGGGAAGCAGTGGAGATGAAAGCAGTGGGTTGAAGAAGGGCCCATGGACGCCGGAAGAGGATAGATCTTTCCATTTGGATTTCCAGTCAAGGTGGTCAGCCATAGCAGGTCATCTTCCTGGAAGAACTGACAATGAAATCAAGAACTTTTGGAATACACATGTGAAGAAGAAGCTTCTTCAAATGGGGTTAGACCCAGTTACTCACCGTCCCAGATCAGACCACCTCAATCTTCTCCACAACCTGCAACGCTTTCTAGCCGCCGCTAATAATATCGCCACCAATACTATTTTCCCATCAAACCCTCCTAATTGGGACAATATTAATATCAATAACACTAATTATAACCTTCAATTGCTACAGAACATTCTTCAAGTCCTCCATACCCCTAATTATAACCTTGAGGCGCTCACGAGTCCCTCTATAACAGACCATCTTCTTTATGAACTATTACGAGGAGGATCACTGAATTATTCTAAGCTTCAAGCTCAAGGTCTTTTCAACAATGGTTCGTCAATTGGTCATGGTAATTTTGCTTCTTCTCATGTTCATCAAAACCAGCCCAATTTGCCAAACCTTGAAGCTCTTCATCAACATCTACCACAACCTAGTGATCATGGTCATGAGCTTCAAAAGATGGCCTGTTTTGCTGCGGCATCGTCGTCAACTTCGCTTCCGACTCTGGTTCCGGCCGCACCGGAATACTCCCCGCCGTCGATTAAGAGAATGAAGAATAAGTTGAATGCATGTGAGGGCTCTAATAGTAATCCTTCTTCCACATCACCAGCTTTTGAAATGTTGGGAGATTTCATGGGCGAGGAAGCAAGCGACGCTTATTGGAAAGACTTCATAGAGTAA 870 0.4402 MMGRTGSSGDESSGLKKGPWTPEEDRSFHLDFQSRWSAIAGHLPGRTDNEIKNFWNTHVKKKLLQMGLDPVTHRPRSDHLNLLHNLQRFLAAANNIATNTIFPSNPPNWDNININNTNYNLQLLQNILQVLHTPNYNLEALTSPSITDHLLYELLRGGSLNYSKLQAQGLFNNGSSIGHGNFASSHVHQNQPNLPNLEALHQHLPQPSDHGHELQKMACFAAASSSTSLPTLVPAAPEYSPPSIKRMKNKLNACEGSNSNPSSTSPAFEMLGDFMGEEASDAYWKDFIE 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1925 289 ProSiteProfiles Myb-like domain profile. 12 59 IPR001005 -
Dere08g1925 289 PANTHER F14D16.11-RELATED 28 233 - -
Dere08g1925 289 CDD SANT 19 59 IPR001005 -
Dere08g1925 289 Pfam Myb-like DNA-binding domain 17 58 IPR001005 -
Dere08g1925 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
Dere08g1925 289 Gene3D - 19 79 - -
Dere08g1925 289 SMART sant 16 61 IPR001005 -
Dere08g1925 289 MobiDBLite consensus disorder prediction 1 24 - -
Dere08g1925 289 SUPERFAMILY Homeodomain-like 12 66 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1925 Dere-ChrDere08 28394658 28397418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1925 15 289 MYB Transcription Factor Family AT5G16770 37.413 6.63e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere08g1925 Myb_DNA-binding 3e-09 CL0123