Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1923 ATGCACCCTCAGCTCCATACTTACCTCTCTTCCTCTGACACACTCTTCTTATCTTTACCCCAACCATCGCTTCCCTCTGCGCTGTCGTGCAACCCAACAAATTCTCTGGACACCAGTGCCAATGTTCAGAATTGGATCGTCAAACAAGTTCGTCCCATAAGATATGTGGCTGCGATTGAAACTTCTCAAAGGACTTCTGATGTGCCCATAGTTTTTCATACTGCGTGGAATGACAGCTCAGCCCATCAACTTTTGCCTGATGAAACCCCAGTGATGTTGCCTAACCAAACCAAAATCAACAAACCAGTAATGCGATGTGAGGTTTGCAAAATTGATTGTAATAACGAGGGTGTATTTGAAAAGCACGTATCTGGAAAGAAGCACAAGAGGAATATGCAGTTGCTGAATAATCCCAGTACCAGTAATACAATATCATCAGGAACCTCTCATGTAAGTTCACAAATCCGAGCCAGTAGTGTACCAGAGCTAGAATCTAAGAAACGGAAGCTTTTGAATGGTGGTGTAGCAGTTGATTCAGTAAGGGTTTGCACAATATGCGACATTGCTTGCAATAGTGAAGAATCTTTTAGCAAACATCTAACAGGGAAAAAGCATGCTGCTCAGGTTTGCTTGACATCAAACGATGGGATTGCCCCAAAGAAAATCAAGGTTGCTCAACTTGCACGGTGTGAAATTTGCATGATCGATTGTAATAGTAAAATTGTATATGAGGCTCACTTATCCGGGAAGAAACATCTGATGAACCTACTAAAACTATCAAAATCAAAAAATGATGGTGCTGGTGCTACTGCAGCTGGTGCTACTGTGGCGACTCTACTGGAAAATGCTATGCAACATGCAACAAATCCAGGAATTGATTCACAGGAAAAGCCAGACACTGGTAAACAAGAAGGGTTTGATTCACATAACCCTGGGAATGCAGTAATGTTAGAGTCTCCAGAAAAGGATTTTGCGACAAAGAACCGTAAACATAAACTTGATGATGGGGGGGCTGCAACTATTTCTGTTAGATTGTGCAGTCTATGTAATGTGGTGTGCAACAGTGAGACGGCCTTTAAGTCTCACCTTGCTGGGCAGAAACATGCTGCTATGTTGAAAAAGCATGCAGAGGCAACTACTGGTTGA 1146 0.4258 MHPQLHTYLSSSDTLFLSLPQPSLPSALSCNPTNSLDTSANVQNWIVKQVRPIRYVAAIETSQRTSDVPIVFHTAWNDSSAHQLLPDETPVMLPNQTKINKPVMRCEVCKIDCNNEGVFEKHVSGKKHKRNMQLLNNPSTSNTISSGTSHVSSQIRASSVPELESKKRKLLNGGVAVDSVRVCTICDIACNSEESFSKHLTGKKHAAQVCLTSNDGIAPKKIKVAQLARCEICMIDCNSKIVYEAHLSGKKHLMNLLKLSKSKNDGAGATAAGATVATLLENAMQHATNPGIDSQEKPDTGKQEGFDSHNPGNAVMLESPEKDFATKNRKHKLDDGGAATISVRLCSLCNVVCNSETAFKSHLAGQKHAAMLKKHAEATTG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1923 381 SMART c2h2final6 344 368 IPR013087 -
Dere08g1923 381 SMART c2h2final6 104 128 IPR013087 -
Dere08g1923 381 SMART c2h2final6 228 252 IPR013087 -
Dere08g1923 381 SMART c2h2final6 181 205 IPR013087 -
Dere08g1923 381 PANTHER ZINC FINGER PROTEIN 385B-LIKE 225 377 - -
Dere08g1923 381 SUPERFAMILY beta-beta-alpha zinc fingers 226 256 IPR036236 -
Dere08g1923 381 SMART ZnF_U1_5 178 212 IPR003604 GO:0003676|GO:0008270
Dere08g1923 381 SMART ZnF_U1_5 225 259 IPR003604 GO:0003676|GO:0008270
Dere08g1923 381 SMART ZnF_U1_5 341 375 IPR003604 GO:0003676|GO:0008270
Dere08g1923 381 SMART ZnF_U1_5 101 135 IPR003604 GO:0003676|GO:0008270
Dere08g1923 381 SUPERFAMILY beta-beta-alpha zinc fingers 82 135 IPR036236 -
Dere08g1923 381 Gene3D Classic Zinc Finger 319 376 - -
Dere08g1923 381 Gene3D Classic Zinc Finger 216 258 - -
Dere08g1923 381 Gene3D Classic Zinc Finger 89 135 - -
Dere08g1923 381 Gene3D Classic Zinc Finger 161 212 - -
Dere08g1923 381 Pfam Zinc-finger of C2H2 type 230 252 - -
Dere08g1923 381 Pfam Zinc-finger of C2H2 type 183 205 - -
Dere08g1923 381 Pfam Zinc-finger of C2H2 type 106 128 - -
Dere08g1923 381 Pfam Zinc-finger of C2H2 type 346 368 - -
Dere08g1923 381 MobiDBLite consensus disorder prediction 288 316 - -
Dere08g1923 381 SUPERFAMILY beta-beta-alpha zinc fingers 339 375 IPR036236 -
Dere08g1923 381 SUPERFAMILY beta-beta-alpha zinc fingers 178 209 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1923 Dere-ChrDere08 28322693 28325190 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1923 156 372 C2H2 Transcription Factor Family AT5G61190 28.384 2.11e-16 79.3