Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1918 ATGAGATATGTGGCTGCGGTCCAAACTTCTCAAGGGACTTCAGATGTGCCCATAGTTTTTCATTCTGCGTGGAATGACAGCTCGGCACATCAATTTTTGCCTAATGAAATCCCAGTGATGTTGCCTAACCAAACCAAAATCAACAAACCAATGGTGCGATGTGATGTTTGCAAAATTGATTGTAATAGTAAGGGTGTATATGGAAAGCACATATCTGGAAAGAAGCACAAGAGGAATTTGCAGTTGCAGAATAATCCCAGTCCCAGTAATACAATATTATCAGAAACCTCTTATGTGAGTTCACAAATCCAAGCCAGTAGTGTACCAGAGTTAGAATCCAAGAAACAGAAGCTTTTGAGTGGTGGTGTAGCAGTTGATTCAGTAAGGGTCTGTACTATATGCAACATTGCTTGCAATAGTGAAGAAGCTTTTAGCAAACATTTAACTGGAAAAAAGCATGCTTCTCAGGTTCGCTTGACATCTAATGATGGGATTGCTCCAAAGAAAATCAAGGTTGCTCAACCTGCACGGTGTGAAATTGGCATGATCGATTGTAATATGACTGTACCGGAAAATTCTATGCAACAGGTAACAAATCCAGGAATTAATACACAGGAAAAGCCAGACAACGATAAACAAGAAGGGATCGATTCACATAAACCAGGGAATGCAGTCATGTTAGAATCTCCAGAAAAGAATTTTACTGAGACAAAGATACGTAAACGTAAACTCGATGATGGGGGGCTGCAACAACTTCAGTTATATTGTGCAGTCTATGCAATGTGGTGTGCAACAGCCAGACGGCCGTTAGTTCTCACCTCGCTGGGCAGAAACATGCTGCTATGGCGAAAAAGCATGCAGAGTCAACTAGTAGTTGAGATGGTTAATGCCATGATCAAAAAGGGTGGTTTTGGAATACAAGTTTGTTCATCTGCATTTGGATGGCCCAACAGCAACGAAGGAACAAAGTTTTCTCAGAAGGGTTCTCTAAATCTTTGCCAAACGAATGATATGTGCATTCATGGCTATGGGATTCAGTTTCAGGGGCTCGTTTGGTGCACAAGTGTTATGCCATTAGAAAAGGAAAGAGAGATGGAAACCATTATAATGCTAATTAGTGCAATGGAAGATGGTGTCTTGGGAATCGTACTTCAATCATCACAAGAAGAGAGAATTCCATCAGCATACGTACGGGTGGATGGGATTGTTAGCAAAGTTGTCAGTGTAAGGTTCAACACTTGA 1242 0.4106 MRYVAAVQTSQGTSDVPIVFHSAWNDSSAHQFLPNEIPVMLPNQTKINKPMVRCDVCKIDCNSKGVYGKHISGKKHKRNLQLQNNPSPSNTILSETSYVSSQIQASSVPELESKKQKLLSGGVAVDSVRVCTICNIACNSEEAFSKHLTGKKHASQVRLTSNDGIAPKKIKVAQPARCEIGMIDCNMTVPENSMQQVTNPGINTQEKPDNDKQEGIDSHKPGNAVMLESPEKNFTETKIRKRKLDDGGLQQLQLYCAVYAMWCATARRPLVLTSLGRNMLLWRKSMQSQLVVEMVNAMIKKGGFGIQVCSSAFGWPNSNEGTKFSQKGSLNLCQTNDMCIHGYGIQFQGLVWCTSVMPLEKEREMETIIMLISAMEDGVLGIVLQSSQEERIPSAYVRVDGIVSKVVSVRFNT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1918 413 Gene3D Classic Zinc Finger 108 160 - -
Dere08g1918 413 Gene3D Classic Zinc Finger 41 84 - -
Dere08g1918 413 PANTHER ZINC FINGER PROTEIN 385B-LIKE 30 161 - -
Dere08g1918 413 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Dere08g1918 413 SMART ZnF_U1_5 126 160 IPR003604 GO:0003676|GO:0008270
Dere08g1918 413 Pfam Zinc-finger of C2H2 type 53 76 - -
Dere08g1918 413 Pfam Zinc-finger of C2H2 type 131 153 - -
Dere08g1918 413 SUPERFAMILY beta-beta-alpha zinc fingers 125 159 IPR036236 -
Dere08g1918 413 MobiDBLite consensus disorder prediction 197 232 - -
Dere08g1918 413 SUPERFAMILY beta-beta-alpha zinc fingers 40 82 IPR036236 -
Dere08g1918 413 SMART c2h2final6 129 153 IPR013087 -
Dere08g1918 413 SMART c2h2final6 52 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1918 Dere-ChrDere08 28197367 28204869 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1918 39 165 C2H2 Transcription Factor Family AT5G61190 25.000 1.99e-06 48.1