Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1914 ATGATCCCCTTCCGATTGCCGTCTGCATCTAAATTGCCCCTGAAAAAGCGTTCTCCATTCCTCGTTTCGCGACTGATGCCTTCATTGATTCAGATTCTACATTTTGGTGTTGGCAATTCATTTTTGCTTGCACAGAAAATAGTGGCACGTCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAAATAGGGGATATTGCAAAATCACATCCTCAAGACTTGATTAGCCTGCTTAAGAAGGTTTCTCGATATCTGCACAGTAAAACTTGGGATACAAGGGTTGCAGCTGCCCATGCAATTGGGGCTATTGCTGAGAATGTTAAGCACACAAGCTTGAATGAACTTATTGCTGCTGTTTCATTAAAAATGTCTGAGGTTGGGATATCTGGTAGTGTTGAAGATTTGTGTGCATGGCCTTACTTACAGTCTAAAATTACGGGAAGTTCATTTAGGAGCTTTGACATCAACAAAGTGCTTGAATTTGGTGCTTTATTAGCATCTGGAGGACAGGAATATGATATAGGAAGTGACAATGTAAAGAACCCAAAGGAGCGGTTGGCTCGCCAAAAGCAAAATCTTCGACGCCGCTTAGGTTTGGATGTATGTGAACAATTTATGGATATCAGTGATGTGATAAGAGATGAAGATCTTATGGCGTACAAATCAGATTTACATCCGTATGGAATAGATCATAGAGTTTTTACATCTCATTCTGTACATAGTATCCAGAAAATGGTTGCAAATATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACGGAATCTCTTAAAGCGTAAAGCTAAAATGAACTCGAAGGACCAAACAAAAAGCTGGTGTGAGGATGGAAATATGGAGGCATCACGTGCTCAAAACTTGACTTCTAGAGGAATATGTCCTGATTCAGTAAATTACAATAAGGCTTTTATGGACAGTAATCATGATGAAGATGGCTTTGATCATGATGGTGACGGACGATGGCCTTTCCACATTTTTGTTGAGCAACTTATTATTGATATGTTCGACCCTGTTTGGGAGGTACGCCATGGTAGTGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCGTCTGCTGGAGTATTTAAAGCTGACTCACGCTTGGGTGGAGAGCTAGTTTTTGAATTGGAAGATAAAAGCATATCAAATGTATCAAAGAGAGACAAGGAGATTGATTTGAATATGCAAGTTTCAGTGGATGAGTTTGAGTCAAACTTTAAGAGGCCAAAGCTTGAAGATGTATCATCCACTTCCATGGATAGCATGATTACTTGCAGCAATGGAGGTGATATTGAAGTCAGCATTAGTACTGAAACTTGTGGATGCAATTTACCCTTGGATGACCGGAATGAGCAATTCAATGATAGTTCTGTTGACTTGGAATCTTGCTCTGAGGGTTTATTTCATTCATGCAAGGGACCTACTAATATAACAGAGCAGAAGGATTGTTCTGATGACAATAAGATTCCATCTAGCAATCTTAATGGGCTTCCTCAGAATTGTGAGCTTGTGAACTTGGTTAATGTGGCTCGAAGTTCCTGGCTTCAAAACTATGAATTTCTTCAAGATTGTGTAATACGCTTCCTCTGTGTGTTGTCACTTGACCGCTTTGGAGACTATGTATCTGATCAGGTTGTTGCTCCTGTGCGGGAAACCTGTGCACAAGCATTAGGTGCTGCCTTCAAGTACATGCATCCACCATTAGTAAACGAAACATTAAATATATTGCTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGCAGCCTTTTAGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTCCTGAATTGCTTGGACGTGTTCTTCCTGCATGCAAATATGGGTTGGAGGACCCAGATGATGATGTTCGAGCAGTTGCTGCTGATGCTTTGATACCAGCTGCTGCTGCAATTGTTGCTTTCCAGGGTCAAACATTGCACTCAATCGTGATGCTCTTGTGGGATATTTTACTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATCTGCTGGCAGAAGTTTATTCCCAGGATGAGATGGTCCCAAAGATGAACAATGCAATTAAATTGGGAGATACGGAAATGGGTGATGTAACTAGAGTTGGTGGCAGTGGTGACCATGGTCATGATGACAACAAAAATCCTTATATGCTTTCTATGTTGGCACCACGCTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTCCGTTTTTCAGCAATTCGCACTTTGGAGAGGCTGCTTGAAGCTGGATATAAAAGAAGCATATTTGAGCAATCTAGTTCTTCATTTTGGCCTTCTTTCATACTTGGTGATACCCTTCAAATTGTATTTCAGAACCTTCTATTGGAATCAAATGAGTCTATTTTGCAGTGTTCCGAGAGAGTTTGGAGGCTCCTTGTTCAGTGTTCAGTAGAGGACTTGGAGATAGCTGCAAGTTCTTACATGAATTCTTGGATAGAACTTGCATCTACGCCATATGGTTCAGCATTAGATGCCTCAAAAATGTTTTGGCCTGTTGCCTTTCCGCTAAAAAGTCAATCTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGTTTGAAAATGAATCTGGTGGGGATTTTGGTGTGGGTTCTATGAAGGGAATTAATCTACAAGAAAGAAATGGTGATGTTTCTATGGGTTCTGTCAAGATTGTTGTTGGTGCTGATGTTGACACATCGGTAACTAATACTAGAGTGATAACTGCTACTGCATTGGGAATTTTTGCTTCTAAGCTTCCAGAGAGTTCCCTCAAATATGTGATTGATCCGCTGTGGAATGCTCTTACCTCTTTGTCTGGTGTCCAGCGCCAGGTTGCATCCATGGTACTTATTTCTTGGTTCAAGGAGATCAAAAGAAATCATGTATCTGAAAACCTTAATAGTGTTCCTGGTGTCCCCAGTAATCTCAAAGATTGGTTGCTGGACTTATTGGCATGTTCAGACCCAGCATTCCCGACAAAAGATTCAATTCTTCCTTATGCTGAGCTTTCAAGAACATATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGCTATGAAATGTTCTGGTATGTTTGATGAGTTATTGTCAACTATGAAAATTGAGTTGGAGAGCTTGAGTGTAGATGATGCCATTAGTTTTGCATCAAAAGTCCCAGCTTTGTCTAGCGATAATGCTGGGAATGACTCCTTGGGAAGAAACATAATGGATGATATTGAGTCATCGAAACAGAGACTCTTGACAACTTCTGGCTATCTAAAATGTGTTCAGAGCAATTTACATGTTACGGTCTCATCTGCTGTTGCGGCTGCAGTTGTCTGGATGTCTGAATTTCCTTCACGCCTGAACCCAATTATTTTGCCTTTGATAGCTTCAATCAAACGAGAGCAGGAAGAAATACTGCAAATGAGGTCAGCCGAGGCACTAGCTGAGCTTATGTATCACTGTGTTGATCGTAGACCTTGCCCCAATGATAAGTTAATTAAGAATATTTGTGGTTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAATTCATTAGATCCATGGAGAGTATTGATGACCAAGGTCTTATGTCCTTTGGAACTCCTGTGGGTAAACAGAGATCAAAGGTGCATGTGCTGGCTGGTGAAGATCGATCAAAGGTGGAGGGCTTCATTAGTAGGCGTGGATCTGAACTCTCCCTGAAGCTTCTATGTGAGAGATTTGGTGCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTAAAGCCAAGCTCTGCTGAATCTCTAGCTGCCTATGAAAAAGAAGTCACTTCGGTTATAGAGTCTGTTAGCAATCCCCAGATCTTGATTAACAATATTCAGGTGGTACGTTCTATCACTCCCATGCTACATGAGGATTTGAAGCCAAAACTGTTGACACTTCTCCCTTGCATTTTCAAATGTGTAAAGCATCCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCAATGGCGAGGTCAATGACTTTGAGAGTCATCGGAGCTGTGGTTGAAAATGCTGTCCCTATGTTGGCAGATGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTGATTAGTTTTCTTGTTCAGGGACTGGGTGTAGAGCTTGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTCAGGTGTATGAGTGATTGTGATCTGTCTGTCAGACAGAGTGTGACACATAGTTTTGCCACTCTTGTACCTCTTCTTCCTTTAGCACGTGGCCTTCCTCCACCTCTTGGTTTAGGAGAAGGTTTATCTAGAAATGCCGAAGATGTGCAATTTTTGGAGCAACTACTTGACAACTCTCATATTGAAGACTACAAATTGTGCACTGAATTAAAAGTAACGTTGAGAAGGTATCAGCAGGAAGGCATAAATTGGTTGGCTTTCTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGATATGGGGCTTGGTAAAACACTTCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCAAACTCCAAATGAGAATCCAGACCTTCTGCCATCTTTAATCATTTGCCCATCAACACTTGTTGCACATTGGGCTTTTGAGATAGAGAAGTTTATTGATGTTTCTATTGTATCTACCCTTCAATATGTTGGTTCTGCTCAAGAGCGGATGAGTCTTAGAGATAACTTCTGCAAGCATAATGTCATCATAACATCATACGATGTTGTTCGGAAAGATATTGATTATTTGGGTCAGCTGCAGTGGAATTTCTGCATTTTAGATGAAGGACATATAATCAAGAATGCCAAGTCTAAGGTTACGCTTTCTGTAAAGCAGTTGAAAGCCCAACATCGCTTGATATTGAGTGGAACGCCAATACAGAATAACATCATGGACTTGTGGTCTCTTTTTGATTTCCTGATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCATGCCACTTATGGAAAACCACTCCTGGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCTTTACACAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCTGATCTGCCAGAAAAAATAATTCAGGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTCTATGAACAGTTTTCTGGTACTCGTGCCAAACAAGAAATCTCTTCTATAGTAACAATGAACGAGTCAGCTGTGACAGAAGGAAGTAGCAGATCACCTAAAGCATCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAATTGTGCAGTCATCCTTTGCTCGTCATTGGTGAGCAGATTGCTGATCAACTATCTACTGTTCTCTCGGAATTATTGCCCGCTGGCTCTGACAACATATCAGAGCTTCACAAACTGCATCACTCCCCAAAATTGGTTGCTCTTCAGGAGATCTTGGAAGAGTGTGGAATTGGAGTTGATGCTTCAGGTTCTGAGGGTGCTGTTAGCATTGGACAGCACAGGGTCTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATCGAAAGAGATCTATTTCAAACACATATGAAGAATGTCACGTATTTGCGACTCGATGGATCTGTTGAGCCGGCAAAGCGATTTGAAATTGTCAAAACTTTCAATTCAGACCCTACTATTGATGTCTTACTGCTTACGACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACTCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGTGATCATCAGGCTATGGACAGAGCACACCGTTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTTTAATTATGCGTGGTACTTTGGAAGAGAAAGTAATGAGTCTACAGCGGTTCAAAGTTTCGGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAGAAGGGAGCTTCTGCTGCGAACCGTTCAAATAACAACACAGATGGAGATTCGAAATCAGTAGGTGGCGGGAAGGGGTTGAAAGCAATACTTGGGGGTTTGGAAGAGCTTTGGGACCATTCACAATATACAGAAGAGTACAATCTGACTCAATTTTTGGCAAAGCTTAATGGCTGA 6294 0.4175 MIPFRLPSASKLPLKKRSPFLVSRLMPSLIQILHFGVGNSFLLAQKIVARQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLISLLKKVSRYLHSKTWDTRVAAAHAIGAIAENVKHTSLNELIAAVSLKMSEVGISGSVEDLCAWPYLQSKITGSSFRSFDINKVLEFGALLASGGQEYDIGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAYKSDLHPYGIDHRVFTSHSVHSIQKMVANMVPSVKSKWPSARERNLLKRKAKMNSKDQTKSWCEDGNMEASRAQNLTSRGICPDSVNYNKAFMDSNHDEDGFDHDGDGRWPFHIFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKADSRLGGELVFELEDKSISNVSKRDKEIDLNMQVSVDEFESNFKRPKLEDVSSTSMDSMITCSNGGDIEVSISTETCGCNLPLDDRNEQFNDSSVDLESCSEGLFHSCKGPTNITEQKDCSDDNKIPSSNLNGLPQNCELVNLVNVARSSWLQNYEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPPLVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKYGLEDPDDDVRAVAADALIPAAAAIVAFQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEVYSQDEMVPKMNNAIKLGDTEMGDVTRVGGSGDHGHDDNKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSIFEQSSSSFWPSFILGDTLQIVFQNLLLESNESILQCSERVWRLLVQCSVEDLEIAASSYMNSWIELASTPYGSALDASKMFWPVAFPLKSQSRAAAKMRAVKFENESGGDFGVGSMKGINLQERNGDVSMGSVKIVVGADVDTSVTNTRVITATALGIFASKLPESSLKYVIDPLWNALTSLSGVQRQVASMVLISWFKEIKRNHVSENLNSVPGVPSNLKDWLLDLLACSDPAFPTKDSILPYAELSRTYSKMRSEAGQLLNAMKCSGMFDELLSTMKIELESLSVDDAISFASKVPALSSDNAGNDSLGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEFPSRLNPIILPLIASIKREQEEILQMRSAEALAELMYHCVDRRPCPNDKLIKNICGLTCMDPSETPQAEFIRSMESIDDQGLMSFGTPVGKQRSKVHVLAGEDRSKVEGFISRRGSELSLKLLCERFGALLFDKLPKLWDCLTEVLKPSSAESLAAYEKEVTSVIESVSNPQILINNIQVVRSITPMLHEDLKPKLLTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLRVIGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDLSVRQSVTHSFATLVPLLPLARGLPPPLGLGEGLSRNAEDVQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHQTPNENPDLLPSLIICPSTLVAHWAFEIEKFIDVSIVSTLQYVGSAQERMSLRDNFCKHNVIITSYDVVRKDIDYLGQLQWNFCILDEGHIIKNAKSKVTLSVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGALAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGTRAKQEISSIVTMNESAVTEGSSRSPKASSHVFQALQYLLKLCSHPLLVIGEQIADQLSTVLSELLPAGSDNISELHKLHHSPKLVALQEILEECGIGVDASGSEGAVSIGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPAKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGASAANRSNNNTDGDSKSVGGGKGLKAILGGLEELWDHSQYTEEYNLTQFLAKLNG 2097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1914 2097 Gene3D - 1130 1458 IPR011989 -
Dere08g1914 2097 SMART helicmild6 1893 1979 IPR001650 -
Dere08g1914 2097 SUPERFAMILY ARM repeat 53 1540 IPR016024 -
Dere08g1914 2097 Pfam Domain of unknown function (DUF3535) 828 1285 IPR022707 -
Dere08g1914 2097 Pfam SNF2-related domain 1519 1815 IPR000330 GO:0005524|GO:0140658
Dere08g1914 2097 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1869 2025 IPR001650 -
Dere08g1914 2097 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1513 1683 IPR014001 -
Dere08g1914 2097 FunFam TATA-binding protein-associated factor BTAF1 1249 1459 - -
Dere08g1914 2097 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1471 1732 - -
Dere08g1914 2097 Pfam Helicase conserved C-terminal domain 1879 1979 IPR001650 -
Dere08g1914 2097 Gene3D - 1472 1732 IPR038718 -
Dere08g1914 2097 CDD DEXHc_Mot1 1501 1733 IPR044078 GO:0005524
Dere08g1914 2097 Gene3D - 12 137 IPR011989 -
Dere08g1914 2097 MobiDBLite consensus disorder prediction 2042 2058 - -
Dere08g1914 2097 MobiDBLite consensus disorder prediction 2042 2061 - -
Dere08g1914 2097 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 51 2096 IPR044972 GO:0003677|GO:0016887|GO:0017025
Dere08g1914 2097 FunFam TATA-binding protein-associated factor BTAF1 48 143 - -
Dere08g1914 2097 FunFam TATA-binding protein-associated factor 172 1743 2061 - -
Dere08g1914 2097 Gene3D - 551 801 IPR011989 -
Dere08g1914 2097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1734 2035 IPR027417 -
Dere08g1914 2097 SMART ultradead3 1497 1694 IPR014001 -
Dere08g1914 2097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1483 1733 IPR027417 -
Dere08g1914 2097 CDD SF2_C_SNF 1848 1990 - -
Dere08g1914 2097 Gene3D - 1743 2059 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1914 Dere-ChrDere08 28094912 28122294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1914 1496 2034 RAD5 or RAD16-like Gene Family AT1G02670 26.701 1.23e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere08g1914 DUF3535 9.5e-103 No_clan