Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1911 ATGATATGTGAAAGAGGAACAATTGTATGTGGTTTATTCACTATGGAATCCTGCAACTGTATTGAGCCACCACCAGCTGATGACTTGTTGATGAAATACCAATATATTTCGGATTTCTTCATTGCCCTTGCATATTTTTCGATCCCTCTAGAGCTTATTTACTTTGTAAAGAAATCAGCTGTATTTCCATACAGATGGGTCCTCGTTCAGTTTGGTGCTTTCATTGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTCAGAGTGCATTCAAAAACTGTGGCAGTAGTAATGACCACTGCTAAGGTTTTGACTGCTGTGGTATCATGTGCAACTGCCCTTATGCTTGTACATATTATTCCTGATTTATTGAGTGTTAAGACTAGAGAGCTATTTTTGAAGAATAAGGCTGCAGAGCTTGATAGAGAAATGGGCTTGATTCGCACACAGGAAGAAACTGGGCGACATGTTAGGATGCTGACTCATGAGATTAGGAGCACTCTTGATAGACACACCATACTTAAAACAACTCTTGTTGAACTGGGTAGAACTTTGGCACTGGAGGAGTGTGCATTATGGATGCCAACTCGTACTGGCTTGGAGCTCCAACTCTCCTACACTCTGAGACAGCAAAACCCAGTTGGATATACAGTACCCATCCATCTTCCTGTGATCAATCAAGTATTTAGCACCAACCGTGCAGTAAAAATTTCACCTAACTGCCCTGTTGCTAGATTACGGCCTCATGCAGGAAAATACATGCCTGGGGAGGTAGTTGCTGTCCGGGTCCCCCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCGGCAGTTTCATCAAGCTATGCTTTGATGGTCTTGATGCTTCCATCAGATAGTGCCAGACAGTGGCACGTCCATGAGTTAGAGCTGGTTGAGGTTGTTGCTGATCAGGTAGCCGTTGCTCTTTCACATGCTGCAATCCTAGAGGAGTCAATGAGGGCTAGGGATCAGCTAATGGAGCAAAATGTAGCACTTGATCTGGCAAGAAGAGAAGCAGAAACAGCAATCCGTGCTCGCAATGATTTTTTGGCTGTTATGAACCACGAGATGAGAACCCCCATGCATGCAATTATTGCGCTCTCCTCATTGTTACAGGAAACAGAGCTGACACCTGAGCAACGTCTGATGGTGGAGACAATATTGAAAAGTAGTAATCTATTGGCTACTCTCATCAACGATGTTTTAGATCTTTCAAGGCTTGAAGATGGCAGTCTGCAACTTGATACAGCAACATTTAATCTTCATTCTGTGTTCAGAGAGGTCCTTAACTTGATTAAACCTGTGGCATCTGTCAAAAAGTTGTCACTCACTTTACATTTAGCTCCAGACTTGCCAGTGTATGCTGTTGGTGATGAAAAACGTCTCATGCAAATTATTCTCAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAGGAGGGTGGTATCTCCATCACTACTTTTCCTGGAAAAGCTGAATCCTTCAGGGATGCGAGTTTTCCTGACTTTATACCAGTGTCAAGTGATAATCACTTTTATATGCAAGTACAGGTTAAAGATTCAGGATCAGGAATTAATCCGCAAGATATACCTACATTATTCACTAAGTTTGCACAAACCCATTCATTAGCGACAAGAAATTCTGGTGGAAGTGGACTTGGCCTTGCAATTTGCAAGAGGTTTGTAAATCTTATGGAGGGGCATATTTGGATTGAGAGTGAAGGTATTGGTAAGGGGTGTACAGTTACCTTCATTGTAAAACTTGGGATCCCAGATCGATCGAATGAATTTAAACCCTCTTTTGCACTTAAAGCTCCGGGAAATCATGGCCCGATAAACTTTGCAGGGCTCAAGGTTCTTGTCTTGGATGACAACGGGGTTAGCAGGACAGTTACAAAGGGACTTCTTGTGCATCTAGGATGTGATGTTACAGCAGTAAGCTCCAGCGAAGAATGCTTGCGTGTTCTTTCTCACGAGCACAAGGTGGTCTTCATGGATGTGTGTTCGGGTATAGATGGTTATGATCTTGCGATAAGAATACACGAGAAGTTTACAAAACGTCAGGATAGACCCCTCATTGTTGCTCTGACTGGAAACACTAACAAGGTTACAAAAGAAAACTGTACGAGGGTTGGAATGGATGGCCTCATATTGAAACCTGTCTCTGTTGATAAGATGCGGGGTGTTTTATCTGATCTACTTGAGCACCGGGTTCTATTTGAAACCCTTTAA 2259 0.4228 MICERGTIVCGLFTMESCNCIEPPPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRVHSKTVAVVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSTNRAVKISPNCPVARLRPHAGKYMPGEVVAVRVPLLHLSNFQIYDWPAVSSSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDTATFNLHSVFREVLNLIKPVASVKKLSLTLHLAPDLPVYAVGDEKRLMQIILNVVGNAVKFSKEGGISITTFPGKAESFRDASFPDFIPVSSDNHFYMQVQVKDSGSGINPQDIPTLFTKFAQTHSLATRNSGGSGLGLAICKRFVNLMEGHIWIESEGIGKGCTVTFIVKLGIPDRSNEFKPSFALKAPGNHGPINFAGLKVLVLDDNGVSRTVTKGLLVHLGCDVTAVSSSEECLRVLSHEHKVVFMDVCSGIDGYDLAIRIHEKFTKRQDRPLIVALTGNTNKVTKENCTRVGMDGLILKPVSVDKMRGVLSDLLEHRVLFETL 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1911 752 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 409 597 IPR036890 -
Dere08g1911 752 FunFam Ethylene receptor 620 752 - -
Dere08g1911 752 CDD REC_ETR-like 626 739 - -
Dere08g1911 752 Gene3D - 621 752 - -
Dere08g1911 752 PRINTS Bacterial sensor protein C-terminal signature 558 576 IPR004358 GO:0016310|GO:0016772
Dere08g1911 752 PRINTS Bacterial sensor protein C-terminal signature 523 537 IPR004358 GO:0016310|GO:0016772
Dere08g1911 752 PRINTS Bacterial sensor protein C-terminal signature 541 551 IPR004358 GO:0016310|GO:0016772
Dere08g1911 752 SMART gaf_1 171 329 IPR003018 GO:0005515
Dere08g1911 752 Pfam His Kinase A (phospho-acceptor) domain 356 420 IPR003661 GO:0000155|GO:0007165
Dere08g1911 752 ProSiteProfiles Response regulatory domain profile. 627 743 IPR001789 GO:0000160
Dere08g1911 752 SMART HKATPase_4 467 599 IPR003594 -
Dere08g1911 752 FunFam Ethylene receptor 1 322 418 - -
Dere08g1911 752 PIRSF Ethylen_sen_hybr_HK 7 750 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Dere08g1911 752 SMART REC_2 626 739 IPR001789 GO:0000160
Dere08g1911 752 Gene3D - 420 604 IPR036890 -
Dere08g1911 752 SUPERFAMILY CheY-like 623 744 IPR011006 -
Dere08g1911 752 FunFam Ethylene receptor 1 420 602 - -
Dere08g1911 752 Pfam GAF domain 171 319 IPR003018 GO:0005515
Dere08g1911 752 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 15 745 - -
Dere08g1911 752 SUPERFAMILY GAF domain-like 171 331 - -
Dere08g1911 752 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 341 421 IPR036097 GO:0000155|GO:0007165
Dere08g1911 752 Pfam Response regulator receiver domain 628 736 IPR001789 GO:0000160
Dere08g1911 752 Gene3D - 321 419 - -
Dere08g1911 752 Gene3D - 149 320 IPR029016 -
Dere08g1911 752 ProSiteProfiles Histidine kinase domain profile. 362 599 IPR005467 -
Dere08g1911 752 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 467 597 IPR003594 -
Dere08g1911 752 CDD HisKA 353 416 IPR003661 GO:0000155|GO:0007165
Dere08g1911 752 SMART HisKA_10 355 420 IPR003661 GO:0000155|GO:0007165
Dere08g1911 752 FunFam Ethylene response sensor 149 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1911 Dere-ChrDere08 28044813 28057480 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1911 15 752 Miscellaneous Gene Families AT1G66340 82.480 0.0 1234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere08g1911 GAF 1.6e-14 CL0161