Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1910 ATGGACAACAGACTCCTTTTGTTCCTGCAGCGTCTTGCAATACTGTTCTTCATTTTCCCGCCTTGCATGTCCATAACGGCGGAAACAGATGCTCTCCTTCAGTTCAAGAAACATTTGGAGGACCCTTTGAATATTTTAGGTTCATGGACTGAATCAGAGTCTCCCTGTGAATTTTATGGAATTACTTGTGATCCACTTTCTGGGAAAGTCACAGAAATCTCACTGGAAAATAAGTCCCTCTCGGGGGGTATTTTCCCATCAATTTCTGTTCTCCAGAGCCTGCAAGTTCTGTCACTGCCATCAAATTTCATTTCTGGAAAGCTTCCATTTGAAATAAGCAACTGTAGCAACCTCAGAGTTCTGAACCTTACAGGAAATGAGATGGTTGGGACTATTCCAGACTTCTCTGGGATGGGAAACCTTGAAGTTCTTGACCTTTCGGCAAATTACTTCTCTGGAAGCTTCCCGAGCTGGGTTGGAAATTTAACTGGTCTAGTTTCGCTGGGACTTGGAGAAAATGAATATATTGAGAGTGAAATTCCAGAGACTCTTGGCAATCTGAAGAAGTTGACTTGGCTGTATCTTGGTGGTTCTCATCTGAGAGGAGAGATTCCAGAATCCATTTATGAAATGAAGGCTTTGGAGACACTGGACATTTCAAGGAACAAGATCTCTGGGAAACTGTCCAAGTCAATTTTGAAGCTGAAAAAACTTTACAAGATTGAGCTTTTTTCAAATAATTTAACAGGACAAATCCCAGTTGAGCTGGCAAACCTGACCAAACTGCGGGAGATTGACATTTCTATGAACAACATGTATGGTAGCTTGCCAGAGTTGATTGGTAATATGAAGAACTTGGTTGTTTTTCAACTATATGAGAACAACTTTTCTGGAGAACTTCCTGCTGGGTTTGAAGATATGGAACATCTTATTGGGTTCTCAATTTATCGAAACAGCTTCACTGGGATGATACCGGAAAACTTTGGCCGATTTTCACCTCTTGAGAGTATTGACATATCAGAGAATCAATTTTCAGGTGATTTTCCAAAGTTCTTGTGTGAAAAGAGGAAGTTGAAATTTTTGCTTGCCTTGCAAAACAATTTCTCAGGTGAGTTGCCTGAGTCTTATGTTACATGCAAATCTTTGGAGAGATTCAGGATCAGCAGGAATCGCTTGTCTGGGAAAATTCCAAATGAGCTTTGGGCACTTCCATATGTAAAAATAATTGATTTGGCTAATAATAAATTTGATGGTGATATATCTCCAGAAATCTGGTTTTCTTCCAGCTTAAGTCAGTTAGTTCTAACCAAGAACAGGTTTTCAGGTAAGCTTCCATCAGAACTTGGCGTGCTGATGAATTTAGAGAAGCTATATTTGAGCAACAACAATTTTTCTGGTCGAATACCACCTGAAATTGGAGCTCTAAAGCAGTTATCCTCTTTGCATCTAGAAGAAAATTCATTAACCGGTTCAATACCGGCAGAATTGGGTAGTTGTCCAAGGCTGGTGGACTTGAATCTTGCTTGGAATTCTCTAAATGGCATTATCCCCCAGTCAGTTTCACTTATGAGCTCATTGAACTCCCTTAATCTATCTGGAAACAAACTTACAGGTTCAATCCCGAAAAGTTTGGTTTCCATGAAATTAAGCTCAATTGATTTTTCTGAAAACAACTTTTCTGGGGAAATTCCGTCTGATCTTCTAATTATTGGCAGTGACAAAGCTTTTGTTGGAAACCCGGCACTTTGTGTCAATGAAAATTCAAAAACTCTCATGAATTCTGAATTGAACAATTGTGCAAGAATACATGATCAGAGAAAGGTCTTTGCTGGTAAAATTATATTACTCTGTATCATTCCTTCTATATTGGTTGTAGTTTTGGCTGTGTTGCTGCTTGTGAGTTATGGAGGCTTCAAGCATGATAAAGCAGATGTCGAGAAAAACTTGCACTGTCAAAAAGAAGTAGATCTGAAATGGAAAATTGCATCTTTCCACCAAGTTGACATCGATGTGGACGAGATATGCAATTTGGATGAAGATAATTTAATTGGAACTGGCGGTACTGGTAAGGTTTATCGAGTTGGGTTGAGGAAGAATGGTGCTGCAGTGGCTGTAAAGCAACTATGGAAAGGAGATGGTGTAAAAATTTTGGCTGCAGAAATGGAGATTCTGGGGAAAATTAGGCATAGAAATATACTTAAGCTTTATGCTTCTCTGCTTAAAGGAGGATCAAACTATTTAGTTTTAGAGTACATGCCAAATGGTAATCTTTTCCAAGCTCTTCACAGACAGATAAAAGGAGGGAAGCCAGAATTGGATTGGTCCCAGAGGTATAAAATTGCACTGGGGACTGCAAAAGGAATTGCCTATTTACATCATGATTGTTCTCCACCTATCATTCACAGGGATATAAAATCCAGCAACATTTTGCTTGATGAGGATTATGAGCCAAAAATTGCTGATTTTGGTGTTGCAAAGTTCGCAGAAAAGAATGATAAGCAGTTGGGTTGTAGCTGTCTTGCTGGCACTCATGGTTATATTGCTCCAGAGCTGGCTTATACACTGGAAGTCACTGAAAAGAGTGATGTGTATAGCTTTGGAGTGGTGTTGTTAGAATTAGTTACTGGGAAGGAACCTATTGAAGAGGAATATGGAGAAGGGAAGGATATTGTGTATTGGGTTATGACTCATCTCGATGACCGTGAAAGTGCTATCAACATTCTTGATGATAAAGTGGCATCTGAGTCTGTTGAGAACGAAATGATTAAGGTCTTGAAGGTTGCTATCCACTGCACAACTAAGCTTCCATCTTTGCGCCCTACCATGAGAGACGTTGTCAAGATGCTTATTGATGCTGATTCTTGCACTCTTCCATCTCCAGACTGCGGTTTCAACAAAGATACAAGGAGTTTTATCTAG 2919 0.396 MDNRLLLFLQRLAILFFIFPPCMSITAETDALLQFKKHLEDPLNILGSWTESESPCEFYGITCDPLSGKVTEISLENKSLSGGIFPSISVLQSLQVLSLPSNFISGKLPFEISNCSNLRVLNLTGNEMVGTIPDFSGMGNLEVLDLSANYFSGSFPSWVGNLTGLVSLGLGENEYIESEIPETLGNLKKLTWLYLGGSHLRGEIPESIYEMKALETLDISRNKISGKLSKSILKLKKLYKIELFSNNLTGQIPVELANLTKLREIDISMNNMYGSLPELIGNMKNLVVFQLYENNFSGELPAGFEDMEHLIGFSIYRNSFTGMIPENFGRFSPLESIDISENQFSGDFPKFLCEKRKLKFLLALQNNFSGELPESYVTCKSLERFRISRNRLSGKIPNELWALPYVKIIDLANNKFDGDISPEIWFSSSLSQLVLTKNRFSGKLPSELGVLMNLEKLYLSNNNFSGRIPPEIGALKQLSSLHLEENSLTGSIPAELGSCPRLVDLNLAWNSLNGIIPQSVSLMSSLNSLNLSGNKLTGSIPKSLVSMKLSSIDFSENNFSGEIPSDLLIIGSDKAFVGNPALCVNENSKTLMNSELNNCARIHDQRKVFAGKIILLCIIPSILVVVLAVLLLVSYGGFKHDKADVEKNLHCQKEVDLKWKIASFHQVDIDVDEICNLDEDNLIGTGGTGKVYRVGLRKNGAAVAVKQLWKGDGVKILAAEMEILGKIRHRNILKLYASLLKGGSNYLVLEYMPNGNLFQALHRQIKGGKPELDWSQRYKIALGTAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEPKIADFGVAKFAEKNDKQLGCSCLAGTHGYIAPELAYTLEVTEKSDVYSFGVVLLELVTGKEPIEEEYGEGKDIVYWVMTHLDDRESAINILDDKVASESVENEMIKVLKVAIHCTTKLPSLRPTMRDVVKMLIDADSCTLPSPDCGFNKDTRSFI 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1910 972 ProSiteProfiles Protein kinase domain profile. 677 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1910 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 231 950 - -
Dere08g1910 972 Pfam Leucine rich repeat 140 200 IPR001611 GO:0005515
Dere08g1910 972 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Dere08g1910 972 SMART LRR_typ_2 211 235 IPR003591 -
Dere08g1910 972 SMART LRR_typ_2 451 474 IPR003591 -
Dere08g1910 972 SMART LRR_typ_2 138 162 IPR003591 -
Dere08g1910 972 SMART LRR_typ_2 523 547 IPR003591 -
Dere08g1910 972 SMART LRR_typ_2 475 499 IPR003591 -
Dere08g1910 972 FunFam Receptor-like protein kinase HSL1 285 592 - -
Dere08g1910 972 SUPERFAMILY Protein kinase-like (PK-like) 674 949 IPR011009 -
Dere08g1910 972 Gene3D Ribonuclease Inhibitor 24 175 IPR032675 -
Dere08g1910 972 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515
Dere08g1910 972 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
Dere08g1910 972 CDD STKc_IRAK 683 949 - -
Dere08g1910 972 SMART serkin_6 677 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1910 972 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Dere08g1910 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Dere08g1910 972 Gene3D Phosphorylase Kinase; domain 1 663 751 - -
Dere08g1910 972 FunFam leucine-rich repeat receptor-like protein kinase TDR 752 959 - -
Dere08g1910 972 Pfam Protein kinase domain 679 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1910 972 Gene3D Ribonuclease Inhibitor 176 232 IPR032675 -
Dere08g1910 972 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524
Dere08g1910 972 Gene3D Ribonuclease Inhibitor 233 310 IPR032675 -
Dere08g1910 972 SUPERFAMILY RNI-like 245 564 - -
Dere08g1910 972 SUPERFAMILY L domain-like 52 346 - -
Dere08g1910 972 Gene3D Transferase(Phosphotransferase) domain 1 752 956 - -
Dere08g1910 972 FunFam Leucine-rich receptor-like protein kinase family protein 667 751 - -
Dere08g1910 972 Gene3D Ribonuclease Inhibitor 311 593 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1910 Dere-ChrDere08 28030077 28034544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1910 13 961 Receptor kinase-like Gene Family AT1G72180 58.830 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere08g1910 Pkinase 3.7e-49 CL0016