Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1896 ATGCAACCCACATCTGCCGGTAACAGTAGCGGCGGAGGCGGTGACGGTGGGCTTTCCCGGTTCCGTTCAACTCCGGCCACGTGGTTAGAGGCACTGCTCAAGGAGGAAGACGACGAAGAACCATTGGACACCACCCAGTGCTTCACTCAGCTGCTCGCTGCAGGTACTGATAACTTGTCCAGAAATACGCCGTCGTTCGATTCGCCAGCGGCTGATGGAGGCGGTTTCAGCGCCGGGTCGTCGTCTGGTGGATTTTTCCGGCAGCATAGTTCTCCGGCGGAGTTCTTCGGAAATTCAGCGGTTGCCTCTGAAACAGGGTACTTCTCCAAGTATGGGGTTCAATCAAACTACGACGTCGTTTCACAAGATATTGATGCTCCTTCCATGGCTAATGCTAATCCAATCGGACCGAAAGTTGAGCATAGTGGTAAAGCACCAGACTTGGATATAGAGAAGATATTGGAGGATTCGGTACCTTGCAGAGTTCGTGCAAAGCGTGGGTATGCTACGCATCCAAGGAGCATTGCTGAAAGGGTTCGGAGAACTCGGATAAGTGACCGCATACGGAAGCTGCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGATATGTTAGACGAGGCTGTGGCATATGTCAAGTCTCTACAGAAGCAAATTGAGGAACTTACAGAGCACCAACGGAGATGTAAATGCACGGTTCAAGAATAA 717 0.5063 MQPTSAGNSSGGGGDGGLSRFRSTPATWLEALLKEEDDEEPLDTTQCFTQLLAAGTDNLSRNTPSFDSPAADGGGFSAGSSSGGFFRQHSSPAEFFGNSAVASETGYFSKYGVQSNYDVVSQDIDAPSMANANPIGPKVEHSGKAPDLDIEKILEDSVPCRVRAKRGYATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELTEHQRRCKCTVQE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1896 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983
Dere08g1896 238 FunFam Transcription factor bHLH130 family 169 237 - -
Dere08g1896 238 MobiDBLite consensus disorder prediction 1 22 - -
Dere08g1896 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 235 IPR036638 GO:0046983
Dere08g1896 238 SMART finulus 174 224 IPR011598 GO:0046983
Dere08g1896 238 Gene3D - 169 238 IPR036638 GO:0046983
Dere08g1896 238 Coils Coil 208 235 - -
Dere08g1896 238 Pfam Helix-loop-helix DNA-binding domain 173 219 IPR011598 GO:0046983
Dere08g1896 238 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 232 - -
Dere08g1896 238 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1896 Dere-ChrDere08 27611404 27616113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1896 20 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 49.791 3.18e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g1896 HLH 8.9e-10 No_clan