Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1891 ATGCGAATGAGCGTCAATGTGTGGTTTTGCTTGGGAGAAATCTGTAGCCTTTTAGCTGCATATGTCAAAGCTCAAAAGACGAAGGCCTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAAGGAGAGAGGGCAAGACAGATTATCGGGCCCGAATTCGGTTGATAAATCAGGACAAGAACAAGTACAACACCCCGAAATATCGTTTTGTGGTTCGATTTACAAACAAGGATATCATTGCGCAAATAATATCTGCTAGCATTGCTGGTGACATTGTTCTTGCTACAGCTTATGCACATGAACTGCCTCACTATGGCCTTAAAGTAGGTCTTACTAACTATGCAGCAGCATATTGCACTGGACTCCTTTTGGCCCGTCGAGTCCTTAAAATGCTTGAAATGGATGAAGAGTATGAGGGGAATGTTGAGGCTACAGGAGAGGATTTTTCAGTTGAACCTGCTGATACTAGGAGGCCATTCCGTTCCCTCCTTGATGTTGGTCTTATTAAGACTACAACTGGAAACCGGGTCTTTGGTGCCCTGAAGGGAGCTTTGGATGGCGGTTTAGATATTCCTCATAGTGATAAAAGATTTGCTGGTTTTGATAAGGAGAAGAAGCAGCTTGATCCTGAGGTTCACCGCAAATATATCTTTGGTAGTCATGTTGCTGCCTACATGAAGACTTTGATGGAAGATGAACCCGAGAAATACCAGTCACAATTCAGCGAATATATCAAGCAAGGAATAGAGCCTGACGGAATTGAGGAGATGTACAAAAAGGTTCATGCAGCCATTCGTGCTGATCCTACTATGAAGAAGTCAGATAAGCAGCCACCGAAGGAACACAAGAGGTACAATATCAAGAAGCTTACTTACGAGGAGAGGAAGGCTAAGTTGATTGAGCGTTTGCAGGCTCTGAACTCTGCAGCTGGTGAAGATGAGGATTACGATGATGAGTGA 957 0.4357 MRMSVNVWFCLGEICSLLAAYVKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIISASIAGDIVLATAYAHELPHYGLKVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPADTRRPFRSLLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKQLDPEVHRKYIFGSHVAAYMKTLMEDEPEKYQSQFSEYIKQGIEPDGIEEMYKKVHAAIRADPTMKKSDKQPPKEHKRYNIKKLTYEERKAKLIERLQALNSAAGEDEDYDDE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1891 318 MobiDBLite consensus disorder prediction 266 287 - -
Dere08g1891 318 Coils Coil 288 308 - -
Dere08g1891 318 SUPERFAMILY Translational machinery components 29 270 - -
Dere08g1891 318 PANTHER RIBOSOMAL PROTEIN L5-RELATED 20 308 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 CDD Ribosomal_L18_L5e 59 188 - -
Dere08g1891 318 FunFam 60S ribosomal protein L5 19 309 - -
Dere08g1891 318 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 32 193 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 Gene3D - 19 309 - -
Dere08g1891 318 PRINTS Ribosomal protein L5 signature 61 80 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 PRINTS Ribosomal protein L5 signature 224 244 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 PRINTS Ribosomal protein L5 signature 102 122 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 PRINTS Ribosomal protein L5 signature 162 181 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 PRINTS Ribosomal protein L5 signature 182 201 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 PRINTS Ribosomal protein L5 signature 38 57 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Dere08g1891 318 Pfam Ribosomal L18 C-terminal region 253 306 IPR025607 -
Dere08g1891 318 Hamap 50S ribosomal protein L18 [rplR]. 32 264 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1891 Dere-ChrDere08 27560446 27563640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1891 21 310 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.414 0.0 506