Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1887 ATGTCACTTTCTCCCACCTCCTCTTTCCAACCCGGCAAGACGTTTCCTCAGTTATGGGGCTTCTTCTGCAGTCCCATATCAGTTAAGATGCATGCTTCTGGTTTGCTTCTAGAGATGAGGAAAGATGATTATGCTATAAAAGAGAAGCCATTTTTGATCGTTGTCCTCAAGAAGACTCATCTCTATGAGGATGAAGAAGGTGTCCCTCCCACCACTCTTCATGAAGTTTCCATTCTGCGTATGCTCTCCAGGGATCTTCATGTCGTCAGGTTGTTGGATGTCAAACAAGGTCAGAACAAGCAAGGAAAGACAGTACTGTATTTGGTGTTTGAGTTCATGGACACCGATATCAAAAAATTCATTCGTAGTTTCCGTCAAACTAGAGAAAACATTTTTGTTCATACAGTTAAAAGCTTGATGTACCAACTTTGCAAGGACATTGCTTTCTGCCATGGTCATGGAATCTTACATAGGGATTTGAAGCCCCATAACCTTTTGATGGACTGCAAGACCATAGTGCTGAAAATCGCTGATCTTGGACTGGCTCGAGCATATATTATGCCGATCAAGAAATATACTCATGAGATACTGACCCTATGGTATAGAGCTCCTGAAGTGCTTTTAGGAGCTACGCATTACTTAATGGCAGTGGATATTTGGTCAGTTGGCTGTATATTTGTCGAATTAGTTACAAAGCAATCATTTTTCCCTGGTGATTCCGAGCTGCAACAACTTCTGCACATATTCAGGCTTTTAGGAGCACCAAATGAAGAGATGGAGGCCAGGCTGACAAGAGGAAAAGAAAACGAGGATGAGAGCTCATGA 825 0.423 MSLSPTSSFQPGKTFPQLWGFFCSPISVKMHASGLLLEMRKDDYAIKEKPFLIVVLKKTHLYEDEEGVPPTTLHEVSILRMLSRDLHVVRLLDVKQGQNKQGKTVLYLVFEFMDTDIKKFIRSFRQTRENIFVHTVKSLMYQLCKDIAFCHGHGILHRDLKPHNLLMDCKTIVLKIADLGLARAYIMPIKKYTHEILTLWYRAPEVLLGATHYLMAVDIWSVGCIFVELVTKQSFFPGDSELQQLLHIFRLLGAPNEEMEARLTRGKENEDESS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1887 274 FunFam Putative cyclin-dependent protein kinase family protein 113 250 - -
Dere08g1887 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Dere08g1887 274 SMART serkin_6 39 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1887 274 Gene3D Transferase(Phosphotransferase) domain 1 113 265 - -
Dere08g1887 274 Pfam Protein kinase domain 52 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1887 274 SUPERFAMILY Protein kinase-like (PK-like) 52 263 IPR011009 -
Dere08g1887 274 Gene3D Phosphorylase Kinase; domain 1 53 112 - -
Dere08g1887 274 ProSiteProfiles Protein kinase domain profile. 22 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g1887 274 PANTHER CELL DIVISION PROTEIN KINASE 51 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1887 Dere-ChrDere08 27450655 27452231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1887 44 268 Core Cell Cycle Gene Families AT1G20930 74.779 2.98e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Dere08g1887 Pkinase 1.7e-44 CL0016