Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1886 ATGGAGAGGTTCAGAGCTGTTACATCTACATATTATAAGGGTGTAGTTGGGAACAAGTCAGATCTCAAAGAGGCCAGGGAGGGGTCTACTGCTGAAGGCAAGGCCTTAGTTGAGGCTGAGGGTTGGTTCTTCATGGAGACATCAACCCTTGATTCATCGAGTGTAGCTTCTGCTTTCCAGACAATGCTAAGAGATGGGCTAGAGATAGAAAAGAAAAAGAAAATCTATGGAGGGTGGTTCAAAAGTGATTTGGAATGCCAAAGGATAATGGATGGGAAGGCAAGTAGCAGGAATTGTTTAGGAAAGGAAATTCCATTATGTTGCATGAAGTCTAAGGCTACTGTTATTTCAGGGTGGTTCTCAGGATCCCAGTCTTGCTCCAGGGAACCGAGTGCCATTTATTTTAACAACCCCATGTGGCCAGGAAAAGCTCACTCAATCAAAGTCGAAAAGATCCTATACAAAGAGAAGTCCGAGTACCAAGAGATCTTGGCTTTTGAGTCGTCAACATATGGGAAAGTACTTGTACTTGATGGGATTGTTCAGTTAACTGTTGGATTTAATGATCCTCGAGTACACTTGAATGTTGGTGATGCTGTTGAATTTCTTCGATGTGCCCCTGAAGGAAAGTATGATGCCATCATTGTTAATTCATTTGATCCTGTGGGTTCTGCTCAGGAACTAATAGAGAAGCCATTTCTTGAGACTATAGCTAAAGCATTAAGGCCTGGTGGAGTGCTTTGCAATATGACAGAAAGTATGTGGCTTCATACGCACCTTATTCAAGAGATGATGTCCATATGTCGAGAGATATTCAAAGGTTCAGTACATTACGCATGGGCAAGTGTTCCAACATATCCGAGTGGTGTGATCGGTTTTCTTTTATGCTCCTCGAAAGGGCCACCTGTTGATTTTATAAGTCCCATGAACCCCATCGAGATGGTTGAAGCTGAAAAGTCTCCTGCACTCCTTAATTTTCACTTGGACCTTGTTAGCCTGGAAGTTGCTAGCAAGATACAATTGAAAGCATTAGCAGAAGAGATGGCAGCAATTAACAAAGGATTACGAAAGGTTAAACAGGAGCTTGCAGCATCTGAAAATGACGGCTCTGTGGCTAAGACTTTCCGTAAGACATTGAAAGAATTTGTTAATGGTGCTGAGTCGAGGGTGCCGTGA 1176 0.4277 MERFRAVTSTYYKGVVGNKSDLKEAREGSTAEGKALVEAEGWFFMETSTLDSSSVASAFQTMLRDGLEIEKKKKIYGGWFKSDLECQRIMDGKASSRNCLGKEIPLCCMKSKATVISGWFSGSQSCSREPSAIYFNNPMWPGKAHSIKVEKILYKEKSEYQEILAFESSTYGKVLVLDGIVQLTVGFNDPRVHLNVGDAVEFLRCAPEGKYDAIIVNSFDPVGSAQELIEKPFLETIAKALRPGGVLCNMTESMWLHTHLIQEMMSICREIFKGSVHYAWASVPTYPSGVIGFLLCSSKGPPVDFISPMNPIEMVEAEKSPALLNFHLDLVSLEVASKIQLKALAEEMAAINKGLRKVKQELAASENDGSVAKTFRKTLKEFVNGAESRVP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1886 391 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 187 298 IPR030374 -
Dere08g1886 391 Gene3D Vaccinia Virus protein VP39 179 343 IPR029063 -
Dere08g1886 391 CDD AdoMet_MTases 176 247 - -
Dere08g1886 391 Gene3D - 2 67 IPR027417 -
Dere08g1886 391 Coils Coil 341 368 - -
Dere08g1886 391 Gene3D Spermidine synthase, tetramerisation domain 110 178 IPR037163 -
Dere08g1886 391 Pfam Spermine/spermidine synthase domain 181 303 - -
Dere08g1886 391 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 117 184 IPR030374 -
Dere08g1886 391 SUPERFAMILY Formin homology 2 domain (FH2 domain) 307 389 - -
Dere08g1886 391 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 304 IPR029063 -
Dere08g1886 391 PANTHER SPERMIDINE/SPERMINE SYNTHASE 96 184 IPR001045 GO:0003824
Dere08g1886 391 Pfam Spermidine synthase tetramerisation domain 138 184 IPR035246 -
Dere08g1886 391 Pfam Ras family 11 65 IPR001806 GO:0003924|GO:0005525
Dere08g1886 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 70 IPR027417 -
Dere08g1886 391 Pfam Formin Homology 2 Domain 312 390 IPR015425 -
Dere08g1886 391 SMART rab_sub_5 1 69 - -
Dere08g1886 391 FunFam Spermidine synthase 1 110 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1886 Dere-ChrDere08 27443595 27446295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1886 306 390 FH2 protein (formin) Gene Family AT5G07780 58.824 1.18e-21 94.4