Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1883 ATGGGGCGTTCGCCTTGTTGCGAGAAAGCACACACAAACAAAGGCGCTTGGACCAAAGAGGAAGACCAACGCCTCATCGATTATATCCGCGTCCATGGCGAAGGCTCTTGGCGTTCTCTTCCAAAAGCTGCCGGATTGCCAAGATGCGGAAAGAGTTGCAGATTGAGGTGGATAAATTACCTTCGTCCTGATCTCAAACGAGGGAACTTCACCGAAGAAGAAGACGATCTCATCATCAAGCTCCATAGTTTACTGGGAAACAAATGGTCTCTGATTGCGGGGCGATTACCTGGTAGAACCGACAACGAGATCAAGAACTACTGGAACACTCACATAAAGCGCAAGCTAATCAGCCGCGGAATCAACCCCCAAACGCACCGAGACCTCAACGAAACCACCGCCACCGCCAATTCCGCCGCCGAGTGGGACTTCAAGAACTCGCCGGCGGGAGAAAACGACGTCGTCATGAAGAAGCAGAGTGATGGTTTCAACTGCATCAGTTTCAGAAGTATGAAGGAGGGTGAAGATTTGAACTACACGAGTAGTGGCACCACTACAGAGGAAGGAACGCCAGTACTGCACGGAGGTTTGGTTCATGGCGGTGGCGAGCCCAATCTGGAGCTGTCGATTGGTCTCGAACCGTTTCAGTCCGAGTCGACTCGTGCGGCACAAAAGAACTCGGCCGAGTCGAAACTCTGCAGAAATTACTACAATGATAGATTTTGCCCTCCTGAGTTCTTAAAACTTTAG 750 0.508 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRVHGEGSWRSLPKAAGLPRCGKSCRLRWINYLRPDLKRGNFTEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLISRGINPQTHRDLNETTATANSAAEWDFKNSPAGENDVVMKKQSDGFNCISFRSMKEGEDLNYTSSGTTTEEGTPVLHGGLVHGGGEPNLELSIGLEPFQSESTRAAQKNSAESKLCRNYYNDRFCPPEFLKL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1883 249 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere08g1883 249 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere08g1883 249 CDD SANT 69 112 IPR001005 -
Dere08g1883 249 FunFam MYB-related transcription factor 13 66 - -
Dere08g1883 249 Gene3D - 69 141 - -
Dere08g1883 249 CDD SANT 16 61 IPR001005 -
Dere08g1883 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere08g1883 249 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere08g1883 249 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere08g1883 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere08g1883 249 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Dere08g1883 249 Gene3D - 14 66 - -
Dere08g1883 249 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 169 - -
Dere08g1883 249 SMART sant 13 63 IPR001005 -
Dere08g1883 249 SMART sant 66 114 IPR001005 -
Dere08g1883 249 FunFam Myb transcription factor 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1883 Dere-ChrDere08 27362167 27363192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1883 1 152 MYB Transcription Factor Family AT4G09460 76.687 1.28e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g1883 Myb_DNA-binding 1.8e-14 CL0123