Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1878 ATGTCCGATCTCGCCCAATCCTTTGGATTCGTCGACATCAGCGACAAACTTAATGGTAATAACACTCATCGGAAGCTTCTGTCGGAGAGTTTGTCGCCGTGGATAAGTCAAGGCCAACGCCACCGTCTCCTTCAGGCAGCCGTCAATGGTCCTGCAGGAATTAAGCCCGACGTGGTTGTGGCTCAAGATGGAACAGGGCAGCTCAAAACACTCAGCGAGGCTCTTAACACTGTTCCGAAGAAGAATGTGAGGCCCTATGTGATTTACGTGAAGGCTGGCTTATACAATGAGATTGTGAACGTGCAGAAGTCAATGAGTTATGTCACCATCATCGGAGATGGTCCCACACTTACCAGGTTCACCGGAAACCTCAACTTTGTGGATGGTGTCCAAACTTACAAAACTGCAACATTCGATAAAGGCTTTGTTACACTATTACCAGAAGCCGCTCCTTCACTTGGAGACCAAAACTGTTGCTTTCTTGACGCAGAGGATGAGGTAACACTAATTGCCGGAGACACTGTTTTCCTTGGTGTTGTTTTTGGCAGTGGCGGTGGCGGTGGCGGTGGAGGAGGGGGCGGTGGGGGTCTAAGTGAAGGATCATCGCCACAGATTTCATGGCTTTCCTCGTCCGACGATGACGACGACGAAGAAGACACCGCCGGTGGGAAATTCCCATCCAGAGGCTTACTCAGGGGCGGCAATGGCTACAATTCAGGACTGGGACGGTATCGTTCAGATCGCTTTACAGGACGCATTCAATTCCAATATGTTCTGATGAAAATCGTAACAGAACCGAACAACAGTCGTCACTTTACTCTCGTCTTTTCTCTTCCTTCCTGTTTCTTTGATTCCAAGTCTACAGTATATATATATATATATATATGTATATTCTTGGAGTCGTCGCTGTGTACTTGTTTTGCGGTTCCTAATTCCTATACCCTTGAGTAA 951 0.4763 MSDLAQSFGFVDISDKLNGNNTHRKLLSESLSPWISQGQRHRLLQAAVNGPAGIKPDVVVAQDGTGQLKTLSEALNTVPKKNVRPYVIYVKAGLYNEIVNVQKSMSYVTIIGDGPTLTRFTGNLNFVDGVQTYKTATFDKGFVTLLPEAAPSLGDQNCCFLDAEDEVTLIAGDTVFLGVVFGSGGGGGGGGGGGGGLSEGSSPQISWLSSSDDDDDEEDTAGGKFPSRGLLRGGNGYNSGLGRYRSDRFTGRIQFQYVLMKIVTEPNNSRHFTLVFSLPSCFFDSKSTVYIYIYICIFLESSLCTCFAVPNSYTLE 316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1878 316 MobiDBLite consensus disorder prediction 190 231 - -
Dere08g1878 316 SUPERFAMILY Pectin lyase-like 54 138 IPR011050 -
Dere08g1878 316 Gene3D - 51 144 IPR012334 -
Dere08g1878 316 Pfam Pectinesterase 57 139 IPR000070 GO:0030599|GO:0042545
Dere08g1878 316 PANTHER PECTINESTERASE 21 139 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere08g1878 Dere-ChrDere08 27264023 27269205 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1878 24 137 Carbohydrate Esterase AT3G05610 52.632 4.25e-31 121