Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1876 ATGCCAAAGCAAAAGCGTCTGAAGTCTGATCTGAATCATCTGATCAGTGTCCTTGTGTTTAGAATGGGAAGAGGAAAGATCGAAATCAAGAGGATTGAGAACACAACGAATCGCCAAGTGACGTTCTGCAAGCGAAGAAATGGACTTCTGAAGAAGGCTTATGAGCTTTCAGTTCTGTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTAGCCGTGGACGCCTCTACGAGTATTCCAACAACAACATAAGGACAACTATAGATAGGTACAAAAAGGCTTGTTCAGATAATTCAAGTGCCAGCTCCATAACTGAAATCAATGCCCAGTACTATCAACAAGAATCCGCAAAGCTGCGACAGCAAATTCAGATGCTGCAAAATTCCAACAGGCACTTGATGGGTGATGCATTGAGCACACTCACTGTGAAGGAACTTAAGCAGCTGGAAAATAGACTTGAAAGAGGAATCTCCAGAATTAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAGATCGAATACTTGCAAAAGAGGGAGATTGAGCTTGAAAATGAAAATCTTTGCCTTCGGACTAAGATAGCTGAAGTGGAGAGGGTTCAGCAAGCAAACATGGTGTCTGGACAAGATCAGTTGAACGCCATGCAAGCCTTAGCTTCTCGCAATTTCTTCAACCCAACAATCATGGAACCTTCTGCAACCGCTTACCCTCAATCCGACAAGAAGATGCTTCATCTTGGGTACCTTCCTATTCTATTTCTATATCTTCTCGTCATCGTCACATTCAGATTTCTCGGTGATCATTTGAAGAATAAATGCCCAATAATGTGGCTTGGAAAAACTATATTATATATGCCAATAGATATCTGA 864 0.4236 MPKQKRLKSDLNHLISVLVFRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRTTIDRYKKACSDNSSASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYLQKREIELENENLCLRTKIAEVERVQQANMVSGQDQLNAMQALASRNFFNPTIMEPSATAYPQSDKKMLHLGYLPILFLYLLVIVTFRFLGDHLKNKCPIMWLGKTILYMPIDI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1876 287 Pfam K-box region 107 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere08g1876 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 Coils Coil 108 128 - -
Dere08g1876 287 FunFam agamous-like MADS-box protein AGL11 34 117 - -
Dere08g1876 287 SUPERFAMILY SRF-like 23 96 IPR036879 GO:0003677|GO:0046983
Dere08g1876 287 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 199 - -
Dere08g1876 287 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 CDD MADS_MEF2_like 23 96 IPR033896 GO:0000977|GO:0045944
Dere08g1876 287 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 Coils Coil 142 184 - -
Dere08g1876 287 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Dere08g1876 287 Gene3D - 34 132 IPR036879 GO:0003677|GO:0046983
Dere08g1876 287 ProSiteProfiles K-box domain profile. 108 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1876 Dere-ChrDere08 27232452 27244781 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1876 22 245 MADS-box Gene Family AT4G09960 73.593 6.23e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere08g1876 K-box 6.5e-27 No_clan