Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1872 ATGGCTCGTGGAAAGGTTCAGATGAAGCGAATCGAGAACCCGGTGCACAGACAGGTCACCTTCTGCAAGCGCCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTTTCTGTGCTTTGCGATGCTGAAATTGGCGTTGTCATTTTCTCCGCCCATGGAAAGCTCTATGAATTAGCCACCAATGGAACAATGCAAGGGCTGATGGAGAGGTACATGAAGTTCACCAGTGGGGCTCAGCCTGGATCTGAAACAGCCGTAACTGAAGCACATCCTCTAGATGCCAAAGAGGAGATCGATGTGCTAAATCAAGAAATTGGAACTTTGCAAAAGGGCCTCAGGTATTTGTTTGGAGGGGGAATTGAAACAACAACAGTGGAAGAATTACAAGTATTGGAGAAGCATCTTGAAATGTGGATCTATCAAATTCGTTCAATGAAGACGAACAACATGTTACGGGAAATACAGACTTTGAAGCACAAGGAGGGAATACTCAAAACTGCAAATATGTATCTCCAAGATAAGATTGTGGAGAATACAGGAATCACTGACTTTGGACCATTTGCTACTGATACTTACCCAGTAATTATACAAGATGAAATATTTAATCTCTAG 609 0.4351 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELATNGTMQGLMERYMKFTSGAQPGSETAVTEAHPLDAKEEIDVLNQEIGTLQKGLRYLFGGGIETTTVEELQVLEKHLEMWIYQIRSMKTNNMLREIQTLKHKEGILKTANMYLQDKIVENTGITDFGPFATDTYPVIIQDEIFNL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1872 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere08g1872 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Dere08g1872 202 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Dere08g1872 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Dere08g1872 202 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Dere08g1872 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere08g1872 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere08g1872 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere08g1872 202 Pfam K-box region 93 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere08g1872 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere08g1872 202 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dere08g1872 202 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere08g1872 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1872 Dere-ChrDere08 27011391 27021623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1872 1 202 MADS-box Gene Family AT1G71692 59.716 5.85e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere08g1872 K-box 3e-20 No_clan