Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1853 ATGGGGGAAAGAAAGTTTAGGGGGGTTCGTCGTCGAAAATGGGGCAAGTGGGTTTCGGAGATTCGCGTGCCAGGGTCGAAGGAACGACTGTGGTTGGGCACATACTCTTCGCCGGAGGCCGCCGCCGTGGCTCACGATGTAGCTTTCTATTGCCTGAAGAGACCGTCTTCCATGGAGATGCTCAACTTTCCTGCCATACTGCCTTCTTACTGCATCCAGCAACACGACGACATGTCACCGAGGTCTGTGCAGAAGGCGGCGTCGGATGCTGGCATGGCCGTCGATGCGCAGAAGATTATTGCTGGGAAGCCATTGACGACGGTGACAGCTGAGGAAGCTTATGAGGAGGAAGATGTCCTAATGAATGTTAATTTTGATGAATCATTGTCACCAGAATTGAAGAATTCAAATATGAATTTCAATTCGAAGCAAAATTATCTTAATAATGATTGGTTTTTGTGGGAAGGTGAGGGAATGAGCATTTCAGTCGAGGATTATACATATTAA 507 0.4793 MGERKFRGVRRRKWGKWVSEIRVPGSKERLWLGTYSSPEAAAVAHDVAFYCLKRPSSMEMLNFPAILPSYCIQQHDDMSPRSVQKAASDAGMAVDAQKIIAGKPLTTVTAEEAYEEEDVLMNVNFDESLSPELKNSNMNFNSKQNYLNNDWFLWEGEGMSISVEDYTY 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1853 168 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Dere08g1853 168 SMART rav1_2 5 70 IPR001471 GO:0003700|GO:0006355
Dere08g1853 168 SUPERFAMILY DNA-binding domain 5 64 IPR016177 GO:0003677
Dere08g1853 168 Pfam AP2 domain 5 52 IPR001471 GO:0003700|GO:0006355
Dere08g1853 168 Gene3D AP2/ERF domain 4 66 IPR036955 GO:0003700|GO:0006355
Dere08g1853 168 ProSiteProfiles AP2/ERF domain profile. 5 64 IPR001471 GO:0003700|GO:0006355
Dere08g1853 168 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Dere08g1853 168 PRINTS Ethylene responsive element binding protein signature 28 44 IPR001471 GO:0003700|GO:0006355
Dere08g1853 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1853 Dere-ChrDere08 26497879 26498385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1853 3 130 AP2-EREBP Transcription Factor Family AT1G71520 53.077 6.01e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere08g1853 AP2 4.1e-10 CL0081