Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1852 ATGAGTTGTGGATCATGCACATCAATGGTGGAAAGAAAGTTTATGGGGGTTCGTCGTCGAAAATGGGGCAAGTGGGTGTCAGAGATTCGCGTACCAGGGTCGAAGGAACGACTATGGTTAGGCACATACGCTTCGCCGGAGGCCGCCGCCGTAGCTCACGATATAGCTTTCTATTGCCTGAAGAGACCGTCTTCCATGGAGAAGCTTAACTTTCCAGCCATGTTGCCTTCTTATTGCATCCAGCAACATCGTGACATGTCACCAAGGTCTGTGCAGATGGCAGCGTCGGATGCAGGCATGGCCGTCGATGCACAGAGGATTATTGCGAGGAAGCCATTGACGACTGAGATAACTGAGAAAGCTTATGACAAGGAGAAGGTCCCAGTGAGTACAGACTTCAAAGAATTGTCTTCAGAATTGAAGAATTCAAATACGAATTTCTGTGCAAAGCAAAATTATCAGAATAATGATTGGTTTTGGTGGGAAGGTGAGAGATTGAACATTTCCATAGAGGATTATTTATCTTAA 528 0.4583 MSCGSCTSMVERKFMGVRRRKWGKWVSEIRVPGSKERLWLGTYASPEAAAVAHDIAFYCLKRPSSMEKLNFPAMLPSYCIQQHRDMSPRSVQMAASDAGMAVDAQRIIARKPLTTEITEKAYDKEKVPVSTDFKELSSELKNSNTNFCAKQNYQNNDWFWWEGERLNISIEDYLS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1852 175 CDD AP2 13 73 IPR001471 GO:0003700|GO:0006355
Dere08g1852 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 128 - -
Dere08g1852 175 ProSiteProfiles AP2/ERF domain profile. 13 72 IPR001471 GO:0003700|GO:0006355
Dere08g1852 175 Gene3D AP2/ERF domain 12 74 IPR036955 GO:0003700|GO:0006355
Dere08g1852 175 SUPERFAMILY DNA-binding domain 13 72 IPR016177 GO:0003677
Dere08g1852 175 SMART rav1_2 13 78 IPR001471 GO:0003700|GO:0006355
Dere08g1852 175 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Dere08g1852 175 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Dere08g1852 175 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1852 Dere-ChrDere08 26462664 26463191 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1852 7 104 AP2-EREBP Transcription Factor Family AT1G22810 58.163 4.21e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere08g1852 AP2 1.5e-09 CL0081