LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g1847	ATGGATATGCCTTCTTCAGCCTCTACCTCCCATGGCGCTGCATCTTCCCCTTACAGAGGCGTTCGCAAGAGGAAGTGGGGCAAATGGGTGTCTGAAATCCGCGAGCCAGGCACCAAGACCAGGATTTGGCTCGGCAGCTTCGAGACGCCGGAGATGGCGGCGGCAGCCTACGATGTTGCCGCCCTCCACTTCCGGGGACGCGAGGCGAGGCTCAACTTCCCGGAACTCGCCACGAGCCTCCCCCGGCCGGCGTCCAACAATGCCGACGACATTCGCATGGCCGCGCATGAGGCGGCTCTGCGGCTCAGGACTACCAGTACCAGTGTGGTGGCGGCAACAGGAGGAGGAGGAGGAGGAGGGGACAGCGGGTTGGATGGCTCCGCCGGTGCCGCGGCGGGGGTGGCGCCGGTGACCGTAAGGCTGTCGCCGACTCAGATTCAGGCGATCAATGAGTCGCCTCTGGACTCTCCCAAGATGTGGATGCAAATGTCTGAGACACTCATGCTTCAGGACTCCATGATGTTTGAGGAGAACGAGTGGGAGGATATGCATAGTGATTCTCTTTGGCAACCTTAG	576	0.6128	MDMPSSASTSHGAASSPYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELATSLPRPASNNADDIRMAAHEAALRLRTTSTSVVAATGGGGGGGDSGLDGSAGAAAGVAPVTVRLSPTQIQAINESPLDSPKMWMQMSETLMLQDSMMFEENEWEDMHSDSLWQP	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g1847	191	CDD	AP2	18	76	IPR001471	GO:0003700\|GO:0006355
	Dere08g1847	191	SMART	rav1_2	17	80	IPR001471	GO:0003700\|GO:0006355
	Dere08g1847	191	MobiDBLite	consensus disorder prediction	1	15	-	-
	Dere08g1847	191	FunFam	Ethylene-responsive transcription factor 2	16	75	-	-
	Dere08g1847	191	SUPERFAMILY	DNA-binding domain	16	75	IPR016177	GO:0003677
	Dere08g1847	191	ProSiteProfiles	AP2/ERF domain profile.	17	74	IPR001471	GO:0003700\|GO:0006355
	Dere08g1847	191	Pfam	AP2 domain	18	66	IPR001471	GO:0003700\|GO:0006355
	Dere08g1847	191	Gene3D	AP2/ERF domain	17	75	IPR036955	GO:0003700\|GO:0006355
	Dere08g1847	191	MobiDBLite	consensus disorder prediction	1	23	-	-
	Dere08g1847	191	PRINTS	Ethylene responsive element binding protein signature	18	29	IPR001471	GO:0003700\|GO:0006355
	Dere08g1847	191	PRINTS	Ethylene responsive element binding protein signature	40	56	IPR001471	GO:0003700\|GO:0006355
	Dere08g1847	191	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	8	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g1847	Dere-ChrDere08	26353916	26354491	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g1847	16	191	AP2-EREBP Transcription Factor Family	AT1G71450	60.556	5.65e-67	201

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere08g1847		AP2	3.8e-13	CL0081