Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1840 ATGGCAGAAGAGGAGCCCAAGCCCTTGAATTATATTCCAGAGATTATCTTGAAGAAACGAAAAAGCACCGAAGCATTAGCCTTGAGGAAAAAGGAGCAACTTGAGCAGAAGAAGTTCCAAACCAAGAACAGCAAGGACTATATTAAAAAGCCCGAGGATTTCATCCTTGAGTATCGCAACAGGGAGCTTGACCTTATTAGACAGAATCGACGCATCAAGAGGAAACGGCCTGAGCCATTGATGCCAGAGTCGAAGTTATTAATAATCATTCGAATACAGGGAAAAAATGACATGCATCCAAAAAGCCGAAGGGTCTTGTACAGCTTCAAATTGAGAAGAATATTCAGTGCTGTCCTTGTGAAGGCAAGTGAGGGAATTATGTCAAAGCTGCTGATGGTGGAACCATATGTTACCTATGGGTATCCTAATCTTAAAAGCATAAAGGACCTAATCTACAAGAAGGGATGTGCAAAAATAGGCAATCAGAAAGTTCCTTTGACGGACAATAACATTATTGAACAGGAATTAGGGCAACATGGTATTGTGTGCGTAGAAGACATGGTCCATGAAATTGTCAATGTTGGTCCACATTTCAAAGAAGTTGCCAATTTTTTGTGGCCCTTTGAACTCAACAAACCGGCTGATGGCTTGCATGGATCGAAAACCTTGTACAAGGATGGCGGAGACACGGGGAACCGGGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAG 738 0.416 MAEEEPKPLNYIPEIILKKRKSTEALALRKKEQLEQKKFQTKNSKDYIKKPEDFILEYRNRELDLIRQNRRIKRKRPEPLMPESKLLIIIRIQGKNDMHPKSRRVLYSFKLRRIFSAVLVKASEGIMSKLLMVEPYVTYGYPNLKSIKDLIYKKGCAKIGNQKVPLTDNNIIEQELGQHGIVCVEDMVHEIVNVGPHFKEVANFLWPFELNKPADGLHGSKTLYKDGGDTGNREDLINELINKMN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1840 245 NCBIfam 60S ribosomal protein uL30 13 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Dere08g1840 245 FunFam 60S ribosomal protein L7 86 190 - -
Dere08g1840 245 Pfam Ribosomal L30 N-terminal domain 13 75 IPR012988 -
Dere08g1840 245 SUPERFAMILY Ribosomal protein L30p/L7e 86 245 IPR036919 -
Dere08g1840 245 PANTHER 60S RIBOSOMAL PROTEIN L7 9 245 IPR039699 -
Dere08g1840 245 Pfam Ribosomal protein L30p/L7e 87 137 IPR016082 -
Dere08g1840 245 CDD Ribosomal_L7_archeal_euk 86 245 IPR035808 -
Dere08g1840 245 Gene3D - 189 245 IPR036919 -
Dere08g1840 245 Gene3D - 86 188 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1840 Dere-ChrDere08 26200626 26202647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1840 1 245 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 57.085 1.84e-95 278