Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1837 ATGGATGAGGGAAAGCGTAAATCTAGGAAGGAAGATTCTGAAGGAAAGGAAGAGGATTCCAAGAGGAGTCGCCGTGATCGAGACCGTGAGAGAACTGGAGAAAAAGGTAAGGATAGAAGTGAAGGGAGGCATAGGGATAGGGAGAAGAGGGATCGTGAGAGTCGACGCTATGAGAGAGAGAAAAGTAGTGATTCCGACGAGCGATTTGACCGAGAAAGAGAGAAGCACAGGGATAAGGATAAGGAGAAGGGTAGGACTAGAGTTCAAGATGAAGAAAGAGAGAGAGCTCGTGACAAGAAAAGGGAAAGAGACAGGGAAGAAAGAGAAAGGGAGAAGAGAGATAGGGCAAGGGAGAAAGAAAGAGAGAAGGATAGAGAAAAAGAAAGGGATAGGAGAGAACGTGAGAGGGAGAGGGAAGTGCAAAGAGAAAAGGGGAGGAGAGTACGGGAGAGGGAGAAGCGTAGGGAAGTTGATAGTGAGTATAGTGATGATGATTCCAGGGATAGAGATAGAAAGCGGCACAAGAAGGATGATGATGATTACAAGGGAAGAGAGCAAGAAAAGAGTGGTAGCAAGTCAAATAGGCAAACTGACAATATTGAGGGGAGCCCAAGGAAAAAGAGTAGTAATGATAACTCACATTCCAATGAAAGTAAACCCACCCGTGAGGAGGAGATAGAGGATGAACATAGGAGATTGGATGAAGAGATGGAAAAGAGGAGGAGGAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAGGGAAGAAGCTGAGAGAGAAAAGCATGGTGAAGCAAGTACCAGTGAACCCAAATCTGGAAAGACCTGGACACTTGAAGGAGAATCTGATGATGAAGAGGGAACCACTACAGGGAAGCCAGATACAGCTATTGATGCAGATGAAGATGACAAACCTTTGGAGAAAGAACCTAGGGATTTGATGGCAGTAGATGCTGGTAATGGAACTGTTGCATCTGATTTGCAGAATGAAGCTGATGGTTCTCATGTGGATGAGGAAATTGATCCATTGGATGCTTTCATGAGTTCTATGGTTCTGCCTGAAGTTGAAAAGCTGAACAATGCTGTGGCTCCTTCAACTGCTGATAGAACTGCTGACTTAAAGCCCAAGGATAAAGTGGAAGAGCAAATCCATGGTGGGAACCCCAGGAAAGGTTCAAATAAATCAATCGGTAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGGAGACCTTGAAATTGAGGATGATCCATTAGATGAAGATGATGACGAGTTCATGAAAAGAGTTAAGAAGACAAAAGCTGAGAAACTTTCTATTGTTGACCACTCAAAGATTGATTATAAACCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCAAAGATGACTCCTGAAGAAGTTGCAGCATACAGGAAGCAGTTGGAGTTGAAGATACACGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGAATCAGATTGGACTTACCCGCAAAATTTTGGAGACAATAAAGAAGCTTAACTATGAAAAACCAATGCCTATTCAAGCTCAGGCCCTCCCTATTATTATGAGTGGTAGAGACTGCATAGGAATTGCTAAAACTGGGTCAGGAAAAACGCTTGCTTTTGTTCTGCCAATGCTGAGGCACATTAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATAATGGCCCCTACAAGGGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTGCAAAAGTACTAGGTCTTAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAACAAATCAGTGAGTTGAAACGCGGTGCTGAGATTGTGGTTTGTACTCCTGGTAGGATGATTGACATATTATGCACCAGTGGTGGAAAGATAACTAACCTGCGTGGAGTCACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATCGTCAAACTGTACTCTTTTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTCTTGAACAGACCAGTTGAAATTCAAGTTGGTGGAAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAAGTGAGGCCAGAAAATGAGAGGTTCTTAAGGCTCTTAGAGTTATTGGGGGAATGGTACGAGAGGGGAAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAGTCCACTATTTCTGACTTTAAAAGCAACGTCTGTAATTTGTTAATCGCAACAAGTGTTGCTGCCAGGGGGTTAGATGTAAAGGAGCTTGAATTGGTAATCAATTTTGATGTGCCAAATCACTATGAAGATTATGTACACCGAGTTGGTCGCACTGGCCGAGCTGGCCGGAAGGGTTGTGCAATCACATTTATTTCTGAGGAGGATGCAAGATATGCTCCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGATTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCTGGAGGTGACATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGTTGCTGCCACAAAGGCAAATTCACCTGCAATGCCCACTGCTTCCCAGCTAATTCCAAATGGTGGTCTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTGCAGCAGTCATGCCTGGGACTGGGCTGCCAATTGTTCCAAATGATGGAGCAACTCGGGCAGCACTAGCTGCTATGAACCTGCAAAATAAATTAGCCAAGATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTGGGTCCAATCTCTGAGTGGACTGGAGCTGCTATTACCACCAGGGGACAGTATTTCCCACCTGGTAGAGTCCCAGGACCTGGGGAACGCAAACTATATTTGTTCATTGAGGGTCCCAGTGAACAGTCTGTTAAAAGAGCAAAAGCAGAATTGAAGCGTGTGTTGGAAGATATCACAAATCAAGCTCTGCAACTTCCTGGTGGTGCTCAACCAGGCAAATATTCTGTTGTATAA 3381 0.4413 MDEGKRKSRKEDSEGKEEDSKRSRRDRDRERTGEKGKDRSEGRHRDREKRDRESRRYEREKSSDSDERFDREREKHRDKDKEKGRTRVQDEERERARDKKRERDREEREREKRDRAREKEREKDREKERDRREREREREVQREKGRRVREREKRREVDSEYSDDDSRDRDRKRHKKDDDDYKGREQEKSGSKSNRQTDNIEGSPRKKSSNDNSHSNESKPTREEEIEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASTSEPKSGKTWTLEGESDDEEGTTTGKPDTAIDADEDDKPLEKEPRDLMAVDAGNGTVASDLQNEADGSHVDEEIDPLDAFMSSMVLPEVEKLNNAVAPSTADRTADLKPKDKVEEQIHGGNPRKGSNKSIGRIIPGEESDSDYGDLEIEDDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKKNFYIEVKEIAKMTPEEVAAYRKQLELKIHGKDVPKPVKSWNQIGLTRKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRGVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNRPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYERGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKANSPAMPTASQLIPNGGLPVSLPAVLGLQTAAVMPGTGLPIVPNDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGRVPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1837 1126 Coils Coil 89 136 - -
Dere08g1837 1126 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 646 654 IPR000629 -
Dere08g1837 1126 SMART helicmild6 752 833 IPR001650 -
Dere08g1837 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 872 IPR027417 -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 907 939 - -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 1 334 - -
Dere08g1837 1126 PANTHER RNA HELICASE 437 911 - -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 276 314 - -
Dere08g1837 1126 CDD KH-I_AtRH42_like 1023 1125 - -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 370 387 - -
Dere08g1837 1126 Coils Coil 1090 1113 - -
Dere08g1837 1126 Pfam Helicase conserved C-terminal domain 725 833 IPR001650 -
Dere08g1837 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 850 IPR027417 -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 406 420 - -
Dere08g1837 1126 FunFam probable ATP-dependent RNA helicase DDX17 453 703 - -
Dere08g1837 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 700 IPR014001 -
Dere08g1837 1126 Pfam DEAD/DEAH box helicase 516 687 IPR011545 GO:0003676|GO:0005524
Dere08g1837 1126 MobiDBLite consensus disorder prediction 361 420 - -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 1 268 - -
Dere08g1837 1126 Coils Coil 223 260 - -
Dere08g1837 1126 Gene3D - 702 875 IPR027417 -
Dere08g1837 1126 Gene3D - 443 701 IPR027417 -
Dere08g1837 1126 CDD SF2_C_DEAD 712 842 - -
Dere08g1837 1126 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Dere08g1837 1126 SMART ultradead3 510 715 IPR014001 -
Dere08g1837 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 711 872 IPR001650 -
Dere08g1837 1126 MobiDBLite consensus disorder prediction 907 921 - -
Dere08g1837 1126 CDD DEADc_DDX46 480 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1837 Dere-ChrDere08 26131708 26135088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1837 478 853 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 6.84e-59 206