Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1815 ATGAAGCCCACTAAGCCGGGGTTGGAGGAGCCCCAGGAGCAGATTCACAAGATCAGGATTACGCTTTCCTCGAAGCACGTGAAAAATCTTGAGAAAGTTTGTGCGGACTTGGTTCGTGGTGCCAAGGACAAGAGGCTCAGGGTCAAGGGACCTGTGAGAATGCCCACTAAAGTTCTTCACATCACAACTAGGAAATCTCCTTGTGGTGAAGGTACCAACACATGGGACCGATTTGAACTCCGTGTGCACAAGAGAGTTATTGACCTCTACAGCTCCCCTGACGTGGTTAAGCAGATCACCTCCATTACAATTGAACCCGGTGTGGAGGTTGAGGTTACCATTGCAGATGCTTGA 354 0.4972 MKPTKPGLEEPQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 117
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1815 117 Hamap 30S ribosomal protein S10 [rpsJ]. 15 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere08g1815 117 SUPERFAMILY Ribosomal protein S10 17 114 IPR036838 -
Dere08g1815 117 SMART Ribosomal_S10_2 19 113 IPR027486 -
Dere08g1815 117 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 10 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere08g1815 117 Pfam Ribosomal protein S10p/S20e 19 113 IPR027486 -
Dere08g1815 117 PRINTS Ribosomal protein S10 family signature 52 67 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere08g1815 117 PRINTS Ribosomal protein S10 family signature 17 30 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere08g1815 117 PRINTS Ribosomal protein S10 family signature 74 88 IPR001848 GO:0003735|GO:0005840|GO:0006412
Dere08g1815 117 ProSitePatterns Ribosomal protein S10 signature. 41 56 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere08g1815 117 FunFam 40S ribosomal protein S20 2 116 - -
Dere08g1815 117 Gene3D Ribosomal protein S10 domain 3 116 IPR036838 -
Dere08g1815 117 NCBIfam 30S ribosomal protein S10 16 114 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere08g1815 Dere-ChrDere08 25702411 25704238 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1815 1 117 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 92.308 2.23e-76 219