Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1806 ATGGGTTCTTCGAACGGCGGTGTGCCTCCGGGGTTTCGGTTTCATCCGACCGACGAAGAGCTTCTTCACTACTACTTGAAGAAGAAGGTGTCGTTTCAGAAGTTCGACATGGAGGTCATCAGAGAAGTGGATTTGAATAAGATAGAGCCTTGGGACTTGCAAGAGAGGTGTAGAATAGGGTCAACGCCACAGAACGAGTGGTACTTCTTTAGCCACAAGGATAGGAAGTACCCGACAGGGTCGAGGACGAATAGGGCAACAAACGCAGGGTTCTGGAAGGCCACAGGGAGAGACAAGTGCATAAGGAACAGCTTCAAGAAGATTGGGATGAGGAAGACTCTTGTCTTCTATAGAGGTCGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGAAGCTGATGATTCTCAAGCCAATCCCAATGAAGATGGGTGGGTGGTTTGCAGGGTATTCAAGAAGAAGAACCTATTCAAAATTGGAAATGAGGGAGGCTCCATGCATAATAATTTAGACCAACAACTCAACCATTCCTCAAGTATCAATCAACCTCGCTCCTTCATGCACAGAGAAAGCCAATACTTACTACATCATCAACAACAGCAAAACCCTAGAAACTCATCTGGATTTGAACTTGATAAACCTGAGCTTGCTCTTCACTATCCTCCTCACTTGCAAAACCCTCAATACTCACTCTTCCAGGCTCAGCCTCTCCTTCCAACCCACAAGCCTATTCCTTATGACTATAATTCTTATCCATCAACCCTACCCTCTGACTCACCCACCATAGCTGCCAAACAACTTATGACAAACCCTAGAGATTGTGATAGTGGAAGTGAGGGCTTGAGGTACCAAGTTTCAGAGAATGGTAATATGGAAGTTGGCACGTGTGAACCCACAACTCAAGAAATGGGAACAGCTGGAAGAGATGATCAAGGGATGAATGAATGGGGTGTGCTTGATAGGCTTGTTGTCACCTCTCATCTTGGAAATGAAGACTCCTCCAAAGGGGTTAGGTTTGAGGATGCAAATGCACAATCTGTTCACCAAATCAACCAGCTTTCATTGCGTGGAGAAATGGACTTTTGGGGCTATGGAAAATAA 1119 0.4558 MGSSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMEVIREVDLNKIEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEEADDSQANPNEDGWVVCRVFKKKNLFKIGNEGGSMHNNLDQQLNHSSSINQPRSFMHRESQYLLHHQQQQNPRNSSGFELDKPELALHYPPHLQNPQYSLFQAQPLLPTHKPIPYDYNSYPSTLPSDSPTIAAKQLMTNPRDCDSGSEGLRYQVSENGNMEVGTCEPTTQEMGTAGRDDQGMNEWGVLDRLVVTSHLGNEDSSKGVRFEDANAQSVHQINQLSLRGEMDFWGYGK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1806 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 211 - -
Dere08g1806 372 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Dere08g1806 372 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Dere08g1806 372 FunFam NAC domain-containing protein 17 163 - -
Dere08g1806 372 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Dere08g1806 372 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1806 Dere-ChrDere08 25518966 25522929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1806 1 369 NAC Transcription Factor Family AT1G33280 54.813 2.94e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g1806 NAM 6.3e-37 No_clan