Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1804 ATGGTGGTGAATGAGAGGCCATCAAAGAGGATGAAGAGGAGGGTCTCAGCCGATCTCTATGACTTTCTCGCCTTTCCGACCGCGGGAGACCGTTGGTACGACGACGTAGGCGCCGTCGGCGACCCCTTCCGGAGAGCCGTTCAGCGGTTCCTGACGAATCATGCGCGCCTCACCTTCCCGCCGTCGCTCTTCCCCTCGCTGATGACGTGGCAGATCTTGTTTCGGATCGGAGGACTCGTCGAGGGGCCCGATCTGTCGCCGGCGATGGTGGCCCTCGACATTGTGGAGGAGGACGTCACTCGATCTCGAAGTTCAGTGTACTGCGACCAGTGCCGAGTTGTTGGATGGAGTGCACATCCTGTATGCCGAAAGCGATATCATTTCATAATAAGGGCTGCAAGTAATCACATGGAAGCATATCAAAGACCTTGTTCAAGGTGTGGGAATTCTCTCCAATTATCCGAGCCAAGGTGTAAATGGTGTAACTCTATGATTACCGTTGATGATCTTGAGGATTGGGTGTATCTTCAAATTGAAGATAACGCTCATCTTCTGCACGGTGTTGTTCACTCCAATGGCTATGGCCACCTTCTTACCCTTAACGGAAGAGAAGGTGGTTCGAAGCTTCTCTCTGGGTCTGACATAATGGGTTTCTGGGATAGGCTCTGTGTTGCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGATGGAATATCGATTGCTTCATGCAATCACCAATGGCTGTTCTTGGTACGGGAATTGGGGTTATGAATTTGGGACTGGTAGCTATGCTCTCACCCAAGATTTGTACCAGAAAGCAGTGAATACTCTGTCAAGCATGCCGTTGTCTAATTTATTATTCCAGGATCGTGGGCCCCGAAGCCACCTGCAGTGTGTTATTTCCCTTTATCAGTCTTTGGCAGATACTGAACTGTTAACTATCAAAGATCTATTCTCCTTTGTAGTGACGTTGATTCGTGGGTTCCGCAAGCCATTGACCCCAAGAACATCGAGTCAGCACGAATCTACTGAAACTTGTAATTTATTGTGTCCTTGGACAAGGAATGATGTCGAAGCTGTGCAACATGTTTTGATCAAGGTACTACTTGCATCGGCTGCTTCAAGCGGCGCCAAATGGGTGACGAGACGTGCTCTCAAAGGTGCAATATGTAGCAGTGTTGCATCTCCAGAGCTTCTAGATTACAGTCTTAAACATTTGGCGGGCAAATTAGCTGCCAATGGCATGGTAGTTAGATCACGATGCATTCCCACATCTAGTGCTGTAGAGTTCAGGCTTGAAACCTTAAATGCTATGGAAAATGCAGTTGGTGCAAATTCAGGTTATCCATCAGAAGAGCAAGTGATCAGTGATTTAAAGTTCTTGTTTGATTCAATCATTCATCCTGAAAGGATGATGAGCTACAGGCCTAGTGTTTTGAGGAAACGGTTGGCTGATTCGGCGAGGAAGCTCCTCGACTGCAAGCAATTTATGAAGGATTACAAGCCTGATCAGATGGCAGTAGAACAACTTCCTCGATGTATTAGGCTGTGGTGTCATGTGGAGCTTTCAGATCAGCCTAGAGATGAGCCCACCCCACCTCCAGAGCTAATTGTGCTGCCCCTGAATGCTACTGTTGCCGACCTCAAGAATGAGGCGACCAATGCTTTTCAAGAGGTATATGCCATGTATAAGAGGTTTCAAGCTGAGGAACTTCTGGAATACGGCTCTATCAAGGATAATCTCACAGTAAAGTTGCTGCTTGGAACAGGTGGGTCTGTCCGAATTCTAGGTAAATGCCCTGCAAAACATGGGCTAAACCGTTTCCGTATGGAAAGAGGAACGGAGACGTGGAAAGTTGACTGCCCTTGTGGGGCTAAGGACGATGATGGGGAAAGAATGTTGGCATGTGATACCTGTGGTGTTTGGCAGCATACCAGATGCGCTGGAATCGATAATTCTAATGCTATTCCCTCCAAGTTTGTGTGCATGAGATGCATCAAATTATACCGCAAGGAAGTCAAGAAACTGCCGTACTCTGTTGATGAAACAAAAAACTCCTTTAAGCCAAATATGTCTTGCAATTCTGTTGATGAAGAAAAAAACTCTTGTAAATCAAATACGTCTTGCAGGGGTGAAGTGGTGGCAACCGACAATACTGCAGTTGCATGTAACATGACTTTTGGTGTACGCTGA 2211 0.4695 MVVNERPSKRMKRRVSADLYDFLAFPTAGDRWYDDVGAVGDPFRRAVQRFLTNHARLTFPPSLFPSLMTWQILFRIGGLVEGPDLSPAMVALDIVEEDVTRSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRAASNHMEAYQRPCSRCGNSLQLSEPRCKWCNSMITVDDLEDWVYLQIEDNAHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCVALAVRKVSVMDLSKKFGMEYRLLHAITNGCSWYGNWGYEFGTGSYALTQDLYQKAVNTLSSMPLSNLLFQDRGPRSHLQCVISLYQSLADTELLTIKDLFSFVVTLIRGFRKPLTPRTSSQHESTETCNLLCPWTRNDVEAVQHVLIKVLLASAASSGAKWVTRRALKGAICSSVASPELLDYSLKHLAGKLAANGMVVRSRCIPTSSAVEFRLETLNAMENAVGANSGYPSEEQVISDLKFLFDSIIHPERMMSYRPSVLRKRLADSARKLLDCKQFMKDYKPDQMAVEQLPRCIRLWCHVELSDQPRDEPTPPPELIVLPLNATVADLKNEATNAFQEVYAMYKRFQAEELLEYGSIKDNLTVKLLLGTGGSVRILGKCPAKHGLNRFRMERGTETWKVDCPCGAKDDDGERMLACDTCGVWQHTRCAGIDNSNAIPSKFVCMRCIKLYRKEVKKLPYSVDETKNSFKPNMSCNSVDEEKNSCKSNTSCRGEVVATDNTAVACNMTFGVR 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1804 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 676 IPR013083 -
Dere08g1804 736 SUPERFAMILY FYVE/PHD zinc finger 617 673 IPR011011 -
Dere08g1804 736 CDD PHD_MMD1_like 626 671 - -
Dere08g1804 736 SMART PHD_3 626 672 IPR001965 -
Dere08g1804 736 ProSitePatterns Zinc finger PHD-type signature. 627 671 IPR019786 -
Dere08g1804 736 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 676 - -
Dere08g1804 736 Pfam PHD-finger 627 672 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1804 Dere-ChrDere08 25495720 25498679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1804 86 671 PHD Transcription Factor Family AT5G22260 29.450 2.53e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere08g1804 PHD 3.6e-09 CL0390