Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1801 ATGACTCCAGCGAACTTGGCAGGTCAGTTTGGTGACACAACATACACCAAGGTGTTTGTAGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAATATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAAATCTAAAGGCTATGGATTTGTAACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATAGATGGTAGGAGGGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGTAGGAACTTTAGGGTGATGGGTTCGTTCCAGACAGGGTTTGGAGGAGGAGTGGGATCGACTTTTCCTTCAGCAGCAACACTGCCTCATTATGCTATCCAGCAAGGGACACCTTATAATGTTTATGGGTACTCTCCATACTCACCGGATTACACTTACCCTACGGGTTACTATAGTGTGTATGGAGGAGCAACCCAGTACCCACTGTATGGAACCGGACCCGGCGGCATGATGACCGGCGGGGCGGCCGCAGCCACCGCCATTTACCCGTATCTCCAGTTCGGAGAAGGGAGCGGTGGCAGTGTAACCAGCGGCTATGCTTCCGGGCAGGGTTACGGTGTCTACTACCCTCCCCAGCTCTTTCAGTACTCTCCCATTACTTCATCTGCTGGGTATGCACAGCACTATGGTGCTCCCATGTCTCTTGCTCCTTCGCCTGCTTTGCAATCAGGCGTGAAGATGGCTCTTCAAGCTCCAATTCCTCATCGCTAG 816 0.5135 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGGVGSTFPSAATLPHYAIQQGTPYNVYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPGGMMTGGAAAATAIYPYLQFGEGSGGSVTSGYASGQGYGVYYPPQLFQYSPITSSAGYAQHYGAPMSLAPSPALQSGVKMALQAPIPHR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1801 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Dere08g1801 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Dere08g1801 271 Gene3D - 4 112 IPR012677 -
Dere08g1801 271 PANTHER BOULE-RELATED 4 251 - -
Dere08g1801 271 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Dere08g1801 271 SMART rrm1_1 17 89 IPR000504 GO:0003723
Dere08g1801 271 CDD RRM_RBM24_RBM38_like 16 91 - -
Dere08g1801 271 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1801 Dere-ChrDere08 25410512 25416324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1801 1 92 C2H2 Transcription Factor Family AT2G19380 39.130 1.38e-13 68.6