Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1796 ATGTCTCAGGACAGTTCAGTCCCTTCTTCGACCTGTTGCTCGAGATCGGATCATTTGGATTCAGCTTCAGCTGAACTCAAGCTTTATCGAGCCTTCATCTTCTCTGTACCCATCTTCTTCACTTTCATCCTGCTCTTTCTGTTCTACGTGTTCTACCTTCGACCACGAAGGGTTGATTGGTCGTCTCTTAGGATGAGGGCATTGACAGAGGATAACAGTGGTATCTCCAGGCCTGAACTGGGCTTGAAGAAAGAACTGAGAGAGATGCTGCCGATTATTGTATACAAAGAAAGCTTCTCAGTTAAAGATACACAATGCTCAGTATGCCTTCTGGACTACCAACCAGAGGATAGACTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTCACCAATCACAGTACCTGCCCTCTCTGCCGCTTGTCCTTACTAGCTTCTGCTAAATCTTCAACAGGGACATCTAATATACAGAGGCCATCCAGTGATGAAGAAACATCATCTGCACAATTCTGTGAACCGAGATCCATAAGTCATACTGATACCACTGTTGTCCAGAATTGCTCCAGAGATGTTGCAAGCAGCGCCCATGGCATTGATGTTGAAAGAGAAAATGCAGAAAGCAGTTAG 651 0.4516 MSQDSSVPSSTCCSRSDHLDSASAELKLYRAFIFSVPIFFTFILLFLFYVFYLRPRRVDWSSLRMRALTEDNSGISRPELGLKKELREMLPIIVYKESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLTNHSTCPLCRLSLLASAKSSTGTSNIQRPSSDEETSSAQFCEPRSISHTDTTVVQNCSRDVASSAHGIDVERENAESS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1796 216 PANTHER OS11G0150450 PROTEIN 42 185 - -
Dere08g1796 216 FunFam RING-H2 finger protein ATL7 72 153 - -
Dere08g1796 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 153 IPR013083 -
Dere08g1796 216 SMART ring_2 106 147 IPR001841 -
Dere08g1796 216 Pfam Ring finger domain 105 148 IPR001841 -
Dere08g1796 216 CDD RING-H2_EL5-like 105 148 - -
Dere08g1796 216 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Dere08g1796 216 MobiDBLite consensus disorder prediction 159 185 - -
Dere08g1796 216 SUPERFAMILY RING/U-box 90 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1796 Dere-ChrDere08 25242003 25248524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1796 21 198 C3H Transcription Factor Family AT4G10150 54.639 1.92e-65 200