Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1746 ATGATGCCACCTTGCTCTTTTTGGGGTCTTCTGAACACAATTAGTAGAGACAAGACAGTTTTGATTCTGAAGAGGTTGGACTCCAAAAGAAGAGAGATGAATATGAATTCTTTTTCTTATGTACCCCCTGGGTTTAGGTTCCATCCCACAGATGAAGAACTTGTAGATTACTACCTGAGGAAGAAAGTCACTTCAAGGAGGATTGACCTTAATGTCATCAAAGATGTGGACCTCTACAAAATTGAGCCTTGGGATCTCCAAGAGATTTGCAGAATAGGAACAGAAGAGCAGAATGAGTGGTACTTCTTTAGTCATAAAGATAAGAAGTATCCTACAGGGACTCGCACAAACAGAGCAACAGCAGCAGGATTCTGGAAAGCAACAGGAAGAGATAAGGCCATATACTCCAAGCATGACCTCATAGGGATGAGGAAGACCTTAGTGTTCTATAAAGGAAGAGCCCCTAATGGACAGAAATCCGATTGGATCATGCATGAGTATCGTCTTGAAACCGATGAAAATGGCACCCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAATAACAACCATGCGCAAAGTGAGTGAGCATGACTCTCCTTGTTGGTATGATGACCAACAAGTCTCAAACTTCATGCAAGACTTGGACTCTCCAAAGCAAAATCCCCATCAATCTCAACCTAGTTTGATCTATCACCACCTCCCTCTTAATAATTATCCTTGCAAGAAAGAGATAGATCATCAACAACATCACAATCCTCTTTCACTGATTCACCAGCTTCCCTCTCGCCACCACTTTCTCCCTCAGCTTCCACTTCTAGATTACCAGAACCCGAAGCTGCTTCACTCTTCGGCTTCCACCGCCATAAACCCTAATAATAATCCAATGGCACCATATGGTATTGATGTCATAGCAGAAGATCAACAACATTTTCAGCCTGTTTATGGCAGTAGTAGCCAAGAACAAGTCGCTGACGACGATCAAGTGACCGATTGGCGAGTGCTCGACAAGTTTGTGGCTTCACAACTTAGTCAAGAAGATTTGCCTAACAAGGAGCACAACAATGCAGGCACAAGTAGCAGCACTACTATCTTTATGGACAATGTTAATGCTAATAATGTACAGTTCAGACCATCACATTTGGAAAAGCAAGAAATGGTGCCTGAAAATGCAGCCTCAACTTCAACCTCAAGTTGCCCGATTGATTTGTGGAAATAG 1230 0.4268 MMPPCSFWGLLNTISRDKTVLILKRLDSKRREMNMNSFSYVPPGFRFHPTDEELVDYYLRKKVTSRRIDLNVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRITTMRKVSEHDSPCWYDDQQVSNFMQDLDSPKQNPHQSQPSLIYHHLPLNNYPCKKEIDHQQHHNPLSLIHQLPSRHHFLPQLPLLDYQNPKLLHSSASTAINPNNNPMAPYGIDVIAEDQQHFQPVYGSSSQEQVADDDQVTDWRVLDKFVASQLSQEDLPNKEHNNAGTSSSTTIFMDNVNANNVQFRPSHLEKQEMVPENAASTSTSSCPIDLWK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1746 409 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 41 298 - -
Dere08g1746 409 SUPERFAMILY NAC domain 36 190 IPR036093 GO:0003677|GO:0006355
Dere08g1746 409 ProSiteProfiles NAC domain profile. 41 190 IPR003441 GO:0003677|GO:0006355
Dere08g1746 409 MobiDBLite consensus disorder prediction 392 409 - -
Dere08g1746 409 Pfam No apical meristem (NAM) protein 42 169 IPR003441 GO:0003677|GO:0006355
Dere08g1746 409 Gene3D NAC domain 50 193 IPR036093 GO:0003677|GO:0006355
Dere08g1746 409 MobiDBLite consensus disorder prediction 388 409 - -
Dere08g1746 409 FunFam NAC domain-containing protein 50 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1746 Dere-ChrDere08 24216753 24221444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1746 35 409 NAC Transcription Factor Family AT1G12260 51.889 1.64e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g1746 NAM 5.7e-38 No_clan