Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1725 ATGGACGCTCTCGAATCGAACCCTAATCACCCTCCCTTACCTCCGTCAGAAACCCTTGCTTCCTCCTACGCTCCTCCACATTCGCAGAACTTCGCCTCAGAGTATCAAAACCCATCTCAGCACTTCGAACTACCTGTAACTTCTTCAGAGTATCAAGTTTCATCGAAACCCCTTGCAGCGGATGGTCAGAACACTAATAATATTCACCCCAATGGCTCCGCGAATGGCCACACAACCCCCGGGGGGAACCCATGCGAGAAAGGTGATGGCGGTGCCGATAATAGTTCGAAGCTTGAGGTTTCGAAGCCGTTGGTTTCGGAGAACGGCGTGACCAATAATACCCAGAGTGGAACCGACAGGGATCATTCTGGTGGCGAAGAAGAGACTACAAGCAGACGCCGCCGGCGAAGTCGGTGGGATCCCCAGCCCGAGTCGAACGACCTGAGCGGAGGCGAATCGGGCAGCGGAACGAGGAAGAGAAAGTCCCGTTGGGCCGATGACGAGCCAAAGCCGGTGATTCAGCTTCCGGACTTCATGGGCGGTATTGAGTTCGATCCTGAAATTCAAGCACTGAATAGTAGGCTTCTTGAGATTAGTCGAATGCTACAATCAGGTTTGCCTCTAGACGATCGCCCGGAGGGTGCTCGATCGCCTTCTCCTGAACCTATATATGATAATATGGGGATTAGAATAAACACTAGGGAATATCGTGCGCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATTATATCCCAGATTATAAAGAAAAACCCCGCATTTAAGCCACCGGCAGATTACAGGCCACCTAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCCGGTTACAATTTTATAGGGCTTATTATTGGTCCGAGAGGCAACACCCAGAAGCGGATGGAGAGAGAGACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCCGTAAAAGAAGGTAGGCTGCAGCAAAAGAGGGATTTGAAGCCTGACCCTTCGGAGAATGAAGATTTGCATGTCTTAGTGGAGGCAGAGACCCAAGAATCACTTGAGGCTGCTGCAGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCGGCCTTAAATGGGACAATTAGGGATGAAGAATATTGTCGGCTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACCCGTACTTCTACATTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGCGATGGTGGCCACCCAAGTATAGATTGCCCGGTAAAAGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGGACAGTTCCTGAATCGGCGACAAAGCAAACTAGCATGTTGACAATTGGTTCAGGCAATTCTGGTAGCAATCCTCCATGGGCTAACAATTCTGCCTCTGCTGGTGGTGCACTACAAGCCGGCTTAGGGGCTAATCCAATTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTGCCACCCACTCTTGATGATGATGGTCTGATTCAATTGTTTCAACAATTTGGTGAGATTGTCATGGCGAAAGTTATCAAGGATCGAATGACTAATTTGAGTAAAGGATATGGATTTGTGAAGTATGCTGATGTTCAAATGGCTAATAACGCAATTATGGCCATGAATGGTTATCGACTCGAGGGAAGAACTATTGCAGTGAGGGTAGCTGGTAAGCCTCCTCAGCCTACAGTACCTCCTGGCCCACCTGCAGCTGCTGTGCCCACATATCCTGTTTCAAGCCAGCCACTTGGTGGCTATCCATCCCAGCAATACACAGCTGGCGGTCCCCTTGGGAGTGCACCCCCGGGAAGTTATGCTGGTGCCCCAGTTCCATGGGGACCTCCTATTCCTCCTCCGTATGCTTCTTATGCTCCTCCCCCACCTGGGTCTAACGTATATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCCGTCCAGGCAGGTCCCCCTGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAAGCACAGCAGAGTTACCCTCCAGGAGTGCAGTCTGACAGTAGTTCCTCTACGCAATCTGTATATGGGAGCTCAGTACCTGCAATGCCACCGACAGCTCAACCTACATATCCTGCATCTTATGGTTATCCACCTTATTACAATGCTGTTCCTCCACCACCTCCCCCTCCTGTTCCTGTACCTGGGTCGACTGCAGATCAATCACAGAGCATTGGAAATGTGCCGTGGGCAACAAATCCTCCAAGATGA 2331 0.4929 MDALESNPNHPPLPPSETLASSYAPPHSQNFASEYQNPSQHFELPVTSSEYQVSSKPLAADGQNTNNIHPNGSANGHTTPGGNPCEKGDGGADNSSKLEVSKPLVSENGVTNNTQSGTDRDHSGGEEETTSRRRRRSRWDPQPESNDLSGGESGSGTRKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSMLTIGSGNSGSNPPWANNSASAGGALQAGLGANPIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPAAAVPTYPVSSQPLGGYPSQQYTAGGPLGSAPPGSYAGAPVPWGPPIPPPYASYAPPPPGSNVYPPMQGQPMPPYGVQYPPVQAGPPGAPSQPATSSEAQQSYPPGVQSDSSSSTQSVYGSSVPAMPPTAQPTYPASYGYPPYYNAVPPPPPPPVPVPGSTADQSQSIGNVPWATNPPR 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1725 776 Gene3D - 392 444 - -
Dere08g1725 776 SMART c2hcfinal6 418 434 IPR001878 GO:0003676|GO:0008270
Dere08g1725 776 SMART c2hcfinal6 392 408 IPR001878 GO:0003676|GO:0008270
Dere08g1725 776 Gene3D - 474 583 IPR012677 -
Dere08g1725 776 FunFam splicing factor-like protein 1 488 590 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 99 119 - -
Dere08g1725 776 SMART rrm1_1 509 582 IPR000504 GO:0003723
Dere08g1725 776 MobiDBLite consensus disorder prediction 154 170 - -
Dere08g1725 776 FunFam splicing factor 1 391 444 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 659 776 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 739 756 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 205 226 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 1 172 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 316 337 - -
Dere08g1725 776 SUPERFAMILY Retrovirus zinc finger-like domains 389 435 IPR036875 GO:0003676|GO:0008270
Dere08g1725 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 510 579 IPR000504 GO:0003723
Dere08g1725 776 MobiDBLite consensus disorder prediction 586 627 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 21 80 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 609 623 - -
Dere08g1725 776 PANTHER RNA-BINDING PROTEIN RELATED 124 629 IPR045071 -
Dere08g1725 776 ProSiteProfiles Zinc finger CCHC-type profile. 393 407 IPR001878 GO:0003676|GO:0008270
Dere08g1725 776 Pfam KH domain 286 358 IPR004088 GO:0003723
Dere08g1725 776 SMART kh_6 271 363 IPR004087 GO:0003676
Dere08g1725 776 ProSiteProfiles Zinc finger CCHC-type profile. 419 433 IPR001878 GO:0003676|GO:0008270
Dere08g1725 776 MobiDBLite consensus disorder prediction 659 685 - -
Dere08g1725 776 MobiDBLite consensus disorder prediction 587 603 - -
Dere08g1725 776 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 271 397 IPR036612 GO:0003723
Dere08g1725 776 Pfam Splicing factor 1 helix-hairpin domain 160 267 IPR032570 -
Dere08g1725 776 Gene3D - 185 262 IPR047086 -
Dere08g1725 776 Gene3D K Homology domain, type 1 263 391 IPR036612 GO:0003723
Dere08g1725 776 MobiDBLite consensus disorder prediction 686 724 - -
Dere08g1725 776 ProSiteProfiles Type-1 KH domain profile. 286 358 - -
Dere08g1725 776 SUPERFAMILY RNA-binding domain, RBD 504 596 IPR035979 GO:0003676
Dere08g1725 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 508 586 IPR000504 GO:0003723
Dere08g1725 776 MobiDBLite consensus disorder prediction 120 142 - -
Dere08g1725 776 CDD KH-I_BBP 270 363 - -
Dere08g1725 776 FunFam splicing factor-like protein 1 263 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1725 Dere-ChrDere08 23677931 23680334 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1725 508 588 Eukaryotic Initiation Factors Gene Family AT1G49760 39.506 4.71e-10 61.2