Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1723 ATGGACGCTCTCGAATCGAACCCGAATCACCCTGTTTTACCTCCGTCAGAAACCCCCGCTTCCTCCTACGCGCCTCCACCTTCGCAGAACTTTGCCTCAGAGTGTCAAAACCCATCTCAGCACTTCGAACAACATTTAACTTCTTCAGAGCATCAAATTTCCTCGAAACCCTATGCATCGGATGGTCAAAACGCTAATAATACTCTCCCCAATGCCACCGTGAATGGCCACACGTACCCCGTGGTGAACTCATGGGATAAAGGTGACGGCGGTGCCGATAACAGTTCGAAGCCGTTGGTTTCGGAGAACGGCGTGACTAATAATACCCAGAGTGGCACCGACAGGGATCAGTCTGGCGGTGAAGAAGAGACTACAAGCAGACGCCGCCGGCGAAGTCGATGGGATCCCCAGCCCGAGTCGAACGACCAGAGCGGAGGCGAATCGGGTAGCGGAACGAGGAAGAGGAAGTCCCGTTGGGCCGATGATGAGCCAAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAGTTCGATCCTGAAATTCAAGCTCTGAATAGTAGGCTTCTCGAGATTAGTCGAATGCTACAATCAGGTTTTCCTTTAGATGATCGCCCGGAGGGTGCTCGATCGCCTTCGCCTGAACCTATATATGATAATATGGGGATTAGAATAAACACTAGGGAATATCGTGCGCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAACCCCGCATTTAAGCCACCGGCAGATTACAGGCCACCAAAGCTTCAGAAAAAGCTTTATATTCCAATGAAAGAATATCCCGGTTACAATTTTATAGGGCTTATTATTGGTCCGAGAGGCAACACCCAGAAGCGGATGGAGAGAGAGACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCCGTAAAAGAAGGTAGGCTGCAGCAAAAGAGGGATTTGAAGCCTGACCCTTCGGAGAATGAAGATTTGCACGTCTTAGTGGAGGCAGAGACACAGGAATCACTTGATGCTGCTGCAGGTATGGTGGAGAAGCTCTTGCAACCGGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCGGCCTTAAATGGGACTATTAGGGATGAAGAATATTGTCGGCTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTACCCGCACTTCTACATTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGCGATGGTGGTCACCCAAGTATAGATTGCCCGGTAAAAGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCCTGGCAGAGTTGGGAGGGACAGTTCCTGAATCGGCAACAAAGCAAACTAGCACATTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCATGGACTAACAATTCTGCCTCTGCTGGTGGTGCACCACAAGCCGGCTTAGGGGCTAATCCAATTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTGCCACCCACGCTTGATGATGATGGTCTGATTCAATTGTTTCAACAATTTGGCGAGATTGTCATGGCAAAAGTTATCAAGGATCGAATGACTAATTTGAGTAAAGGATATGGATTTGTGAAGTATGCTGATGTTCAAATGGCTAATAACGCAATTATGGCCATGAATGGTTATCGACTTGAGGGACGAACTATTGCAGTGAGGGTTGCTGGTAAGCCTCCTCAGCCTACAGTACCTCCTGGGCCACCCGCAGCTGCTGTGCCCTCATATCCTGTTTCAAGCCAGCCACTTGGTGCCTATCCATCCCAACAATATGCAGCCGGCGGTCCCCTTGGGAGTGCACCACCCGGAAGTTATGCTGGTGCTCCAGTTCCATGGGGACCTCCTATTCCTCCTCCGTACGCTTCTTATGCTCCTCCCCCACCTGGGTCAAATGTATATCCACCTATGCAAGGTCAACATATGCCTCCTTATGGTGTTCAATATCCTCCCGTCCAGGCGGGTCCCCCTGGTGCTCCATCCCAGCCTGCTACTTCTAGTGAAGTGCAGCAGAGTTACCCTCCAGGAGTGCAGTCTGACAATAGTTCCTCTACTCAATCTGTATATGGGAGCTCAGTACCTGCTATGCCACCGACAGCTCAACCTACATATCCCGCATCTTATGGTTATCCACCTTATTACAATGCTGTTCCTCCACCACCTCCCCCTCCTGTTCCTGTACCTGTGTCGACTGCAGATCAATCCCAGAGCATTGGAAATGTGCCAGTATGA 2298 0.4887 MDALESNPNHPVLPPSETPASSYAPPPSQNFASECQNPSQHFEQHLTSSEHQISSKPYASDGQNANNTLPNATVNGHTYPVVNSWDKGDGGADNSSKPLVSENGVTNNTQSGTDRDQSGGEEETTSRRRRRSRWDPQPESNDQSGGESGSGTRKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGFPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSNPPWTNNSASAGGAPQAGLGANPIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPAAAVPSYPVSSQPLGAYPSQQYAAGGPLGSAPPGSYAGAPVPWGPPIPPPYASYAPPPPGSNVYPPMQGQHMPPYGVQYPPVQAGPPGAPSQPATSSEVQQSYPPGVQSDNSSSTQSVYGSSVPAMPPTAQPTYPASYGYPPYYNAVPPPPPPPVPVPVSTADQSQSIGNVPV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1723 765 MobiDBLite consensus disorder prediction 456 485 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 734 751 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 654 765 - -
Dere08g1723 765 SUPERFAMILY RNA-binding domain, RBD 499 591 IPR035979 GO:0003676
Dere08g1723 765 Gene3D - 468 578 IPR012677 -
Dere08g1723 765 MobiDBLite consensus disorder prediction 23 80 - -
Dere08g1723 765 FunFam splicing factor-like protein 1 258 386 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 149 165 - -
Dere08g1723 765 Gene3D K Homology domain, type 1 263 385 IPR036612 GO:0003723
Dere08g1723 765 ProSiteProfiles Zinc finger CCHC-type profile. 388 402 IPR001878 GO:0003676|GO:0008270
Dere08g1723 765 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 574 IPR000504 GO:0003723
Dere08g1723 765 MobiDBLite consensus disorder prediction 116 137 - -
Dere08g1723 765 FunFam splicing factor-like protein 1 483 585 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 96 115 - -
Dere08g1723 765 Pfam KH domain 281 329 IPR004088 GO:0003723
Dere08g1723 765 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 581 IPR000504 GO:0003723
Dere08g1723 765 FunFam splicing factor 1 386 439 - -
Dere08g1723 765 SMART kh_6 266 358 IPR004087 GO:0003676
Dere08g1723 765 CDD KH-I_BBP 265 358 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 580 599 - -
Dere08g1723 765 Pfam Splicing factor 1 helix-hairpin domain 155 262 IPR032570 -
Dere08g1723 765 ProSiteProfiles Zinc finger CCHC-type profile. 414 428 IPR001878 GO:0003676|GO:0008270
Dere08g1723 765 Gene3D - 386 439 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 681 719 - -
Dere08g1723 765 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 266 392 IPR036612 GO:0003723
Dere08g1723 765 MobiDBLite consensus disorder prediction 1 169 - -
Dere08g1723 765 PANTHER RNA-BINDING PROTEIN RELATED 116 624 IPR045071 -
Dere08g1723 765 Gene3D - 180 258 IPR047086 -
Dere08g1723 765 MobiDBLite consensus disorder prediction 311 331 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 582 598 - -
Dere08g1723 765 SUPERFAMILY Retrovirus zinc finger-like domains 384 430 IPR036875 GO:0003676|GO:0008270
Dere08g1723 765 ProSiteProfiles Type-1 KH domain profile. 281 353 - -
Dere08g1723 765 MobiDBLite consensus disorder prediction 456 494 - -
Dere08g1723 765 SMART rrm1_1 504 577 IPR000504 GO:0003723
Dere08g1723 765 SMART c2hcfinal6 413 429 IPR001878 GO:0003676|GO:0008270
Dere08g1723 765 SMART c2hcfinal6 387 403 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1723 Dere-ChrDere08 23651659 23654027 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1723 503 634 Eukaryotic Initiation Factors Gene Family AT3G16380 30.935 1.75e-10 62.4