Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1703 ATGTACATCAAGGAGATTTGCTTAGAAGGTTTCAAATCCTATGCTACCAGAACTGTTGTTCCGGGTTTCGATCCCTACTTCAACGCCATTACGGGCTTGAACGGTTCCGGCAAGTCAAACATACTTGATTCGATTTGCTTTGTACTTGGGATCACGAATTTGCAGCAGGTTCGGGCTTCTAACCTTCAGGAGCTCGTGTATAAGCAAGGGCAGGCAGGAATTACAAAAGCTACGGTGTCAATTGTGTTTGATAACACGGATAGGAGTCGAAGCCCACTTGGGTATGAAAGCCATCCAGAAATTACAGTGACAAGACAGATTGTGGTTGGAGGAAGGAACAAATATTTGATCAATGGGAAACTTGCTCAGCCTAGTCAAGTTCAAAACCTTTTCCATTCAGTGCAGCTAAATGTTAATAATCCACATTTTCTTATAATGCAAGGGCGTATTACCAAGGTTTTAAATATGAAACCACCAGAGATATTATCTATGCTTGAGGAAGCTGCAGGGACAAGAATGTATGAGACAAAGAAAGAGGCTGCTCTGAAAACACTTGAGAAGAAGCAGAGTAAGGTTGATGAGATTAATAAGCTTCTTGACCAGGAGATACTACCTGCTCTAGAGAAGTTAAGGAAAGAAAGGACGCAGTACATGCAGTGGGCCAATGGCAATGCTGAGTTAGATAAGCTGAAAAGATTTTGTATTGCTTATGAGTATGTCCAAGCAGAGAGGATTAGAGACAATGCTGTGTCTGAGGTGGAACAAGTAAAGGTCAAGATAGCTGAGATTGATGAATGTGCTAAGACTACACAGGTTGAAGTACAGGAAATGGAGGCAAAAATAGCTAGGTTGACTGCAGAAAAGGAAAAAGCCATGGGTGGAGAAGTGAAATCTTTGTCAGACAAGGTAGATGCACTTTCACAGAATCTTGTGAGGGAAACATCTGTACTAAGTAATAAAGAGGACACTCTGAGAAGTGAAAAAGCCAATGAAGAAAATATTGTTAATAATGTTGAAGACTTGAAGCAATCTGTTGAAGAGAAGGCCTTAGCTGTAAAGAAGGCTGAAGAGGGAGCTGTTGATCTCAAAAGGAAAGTTGATGAGCTTTCTAAGAGTCTGGAGGAGCATGAAAAGGAATACCAGGGTGTATTGGCTGGGAAGAGCAGTGGAAATGAGGAAAAATGCTTACAGGATCAGCTAGGTGATGCAAAGATATCAGTTGGGAGTGCTGAAACAGAATTGAAACAGCTAAAAACTAAAATTAGCCACTGTGAAAAGGAGCTGAAAGAGAAAAGGCATCAATTAAGATCAAAACAGGAAGAAGCTACTTCCGTAGAAAATGAGCTCAAGGCCAGAAGGAAAGATGTGGAGAACGTGAAGATGGAATTGGACTCTCTTTCTTATACAGATGGTGAGATGGAATCTTTGCAAAAGGAGCGTGCATCTGAGATGGAGTGGGTGCAAAAGTGGAAGGATGAAATACGCAATCTTTCAGCACAGTTAGCGAATGTTGAATTTATATACCGTGACCCAGTCAAGAACTTTGATAGGTCAAAGGTCAAAGGTGTGGTCGCAAGACTCATCAAAGTAAAAGATAGGGCAACAATGACTGCCCTAGAGGTTACTGCTGGTGGAAAGTTGTTCAATGTTGTAGTTGACACTGAAAATACTGGAAAACAGCTGCTACAGAATGGTGATTTAAGAAGAAGAGTGACAATTATACCTTTGAACAAAATACAATCCCATACTGTTCCCTCTAGAATTCAACAAGCTGCTGTTAGATTGGTTGGTGAGGAGAATGCTGAACTGGCACTTTCCTTGGTTGGTTATGAAGAAGAATTGAAGAGTGCTATGGAATATGTATTTGGTTCCACCTTTGTTTGCAAAAATATTGATGCTGCTAAGGAGGTGGCATTTAATCGGGAGATTCGCACCCCAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTCTGACTGGTGGAAGCCGAAAGGGTGGTGGCCAACTTTTAAGGCAACTTCATGATTTAGCAGAGGCTGAGTCAGAACTTTCAATGCATCAGAGAAGGTTGTCCGAGGTTGAGGCCAAGATTGCAAAGCTTCTTCCTCTTCAGAAGAAATGGCAGGACCTCAATGCACAGTTAGAACTTAAGTCATATGATCTTTCATTGTTTCAAAGTAGAGCTGAGCAAAATGAGCATCATAAGCTTGGGGAACTAGTGAAGAAGATTGAGCAAGAACTTTCAGAAGCAAAATCTGCGGTCAAGGAAAAGCAACTTATTTATGAAAACTGTGTCAAGACTGTTTCATTGCTTGAGACATCAATCAAAGAACACGACAATAATCGTGAGGGTAGGCTAAAAGACTTGGAGAAGAAGATTAAATCATTCAAATCCCAAATGCAGTCATCTCTAAAAGATCTCAAGGGACATGATAATGATAAGGAGAGGCTTGTAATGGAAATGGAAGCTGTTATTCAGGAGACTGTGTCCCTGGAGAATCAATTAGCTTCTTTGAGGACACAAGTTAATAATCTTGAATCAGAAGTTGAGGAACAGAAAACAAGGGTTGCTGCTGCAAGGAGTAACCATGATCAGGTTCTTTCAGAGCTGAATTCAGTTCGCCTAAAAATGAAGGAATGTGATAAGGAAATTAGTGCTATCATGAAGGAACATCAAGAACTTGAACATAAACTTAGTGAGAATAATCTTGAAAGGAAGAGAATGGAGAATGAGGTAAAACGGATGGAGATGGACCAAAAAGACTGTTCTGTCAGGGTGGATAAATTGATAGAGAAACATGCATGGATTGCTTCTGAAAAACAGTTGTTCGGCAAAAGTGGGACTGATTATGATTTTTCTTCCTGTGATCCTTGTAAAGCAAGGGAAGAACTTGAGAAGCTTCAAGCTGAACAGTCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTTATGGCGATGTTTGAGAAGGCTGAGGATGAGTATAATGATCTGATGTCCAAGAAAAACATAATTGAGAATGACAAGTCCAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACACTAAATGTTACCTGGGTTAAAGTTAACAACGACTTTGGATCCATCTTTTCTACTTTGCTACCGGGCACAATGGCAAAGTTAGAACCTCCTGAAGGTTGCACTTTTCTTGATGGTCTTGAAGTTCGTGTAGCATTTGGGGGTGTGTGGAAACAGTCCTTGTCAGAACTAAGTGGTGGTCAACGATCACTGCTTGCACTTTCACTGATTCTTGCACTGCTTCTATTCAAACCTGCTCCACTTTACATCCTTGACGAGGTTGATGCGGCTCTTGATTTAAGCCATACACAAAACATAGGGAGAATGATAAAGGCTCACTTCCCACACTCCCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTTAATAATGCAAATGTTCTTTTCCGGACAAAGTTTGTGGATGGTGTCTCAACTGTTCAGCGAACTGCCACAGCTAAGCAGAGCAAGTGA 3531 0.4098 MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNTDRSRSPLGYESHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGNAELDKLKRFCIAYEYVQAERIRDNAVSEVEQVKVKIAEIDECAKTTQVEVQEMEAKIARLTAEKEKAMGGEVKSLSDKVDALSQNLVRETSVLSNKEDTLRSEKANEENIVNNVEDLKQSVEEKALAVKKAEEGAVDLKRKVDELSKSLEEHEKEYQGVLAGKSSGNEEKCLQDQLGDAKISVGSAETELKQLKTKISHCEKELKEKRHQLRSKQEEATSVENELKARRKDVENVKMELDSLSYTDGEMESLQKERASEMEWVQKWKDEIRNLSAQLANVEFIYRDPVKNFDRSKVKGVVARLIKVKDRATMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSHTVPSRIQQAAVRLVGEENAELALSLVGYEEELKSAMEYVFGSTFVCKNIDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRKGGGQLLRQLHDLAEAESELSMHQRRLSEVEAKIAKLLPLQKKWQDLNAQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELSEAKSAVKEKQLIYENCVKTVSLLETSIKEHDNNREGRLKDLEKKIKSFKSQMQSSLKDLKGHDNDKERLVMEMEAVIQETVSLENQLASLRTQVNNLESEVEEQKTRVAAARSNHDQVLSELNSVRLKMKECDKEISAIMKEHQELEHKLSENNLERKRMENEVKRMEMDQKDCSVRVDKLIEKHAWIASEKQLFGKSGTDYDFSSCDPCKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGCTFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTATAKQSK 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1703 1176 Coils Coil 736 763 - -
Dere08g1703 1176 Coils Coil 487 507 - -
Dere08g1703 1176 Coils Coil 178 198 - -
Dere08g1703 1176 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Dere08g1703 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Dere08g1703 1176 Coils Coil 982 1026 - -
Dere08g1703 1176 SUPERFAMILY Smc hinge domain 478 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Dere08g1703 1176 Coils Coil 324 379 - -
Dere08g1703 1176 PIRSF SMC 1 1165 IPR024704 GO:0005524|GO:0016887
Dere08g1703 1176 FunFam Structural maintenance of chromosomes 2 995 1174 - -
Dere08g1703 1176 Coils Coil 407 462 - -
Dere08g1703 1176 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Dere08g1703 1176 Gene3D - 423 590 - -
Dere08g1703 1176 Gene3D - 591 666 - -
Dere08g1703 1176 Coils Coil 880 921 - -
Dere08g1703 1176 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Dere08g1703 1176 Gene3D - 788 945 - -
Dere08g1703 1176 Gene3D - 1 202 IPR027417 -
Dere08g1703 1176 Coils Coil 789 809 - -
Dere08g1703 1176 Coils Coil 817 865 - -
Dere08g1703 1176 SUPERFAMILY Tropomyosin 681 893 - -
Dere08g1703 1176 FunFam Structural maintenance of chromosomes 2 518 584 - -
Dere08g1703 1176 FunFam Structural maintenance of chromosomes 2 1 202 - -
Dere08g1703 1176 Coils Coil 267 294 - -
Dere08g1703 1176 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1174 - -
Dere08g1703 1176 Coils Coil 679 699 - -
Dere08g1703 1176 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Dere08g1703 1176 Gene3D - 995 1176 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1703 Dere-ChrDere08 23077099 23093498 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1703 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 2.17e-07 53.5