Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1685 ATGACTATGAGGTTTATAGCAATTTCAGCGGTTTCTACAATTTTGAGCTTTGTGGGTGTACAATGTGGCTCGGAGTTGTCATTCAATAAACTAAAATCGTATGGACTAATTAGCAAGAATTTAATACACTTGAAAAATGAGAACACCAGCCATGTCATTGAGCTACTTTTGGGTTCGTACACCACCATATGGTTGCTGGCAAATTTTATGATCAATGCATTTATCCTTCTCAATCTTTGTCTTAAGACTATATTTTTCTCTGAGTTGTACCCTACTGAAACTCGGAAGCTGGTTGAGCATCTCATTAATTATGTCATCTACAAGGGGACATTTCTACCATTGATAGTGCCTCCAACTATATATCAGGCTTTTCTGTGGTCTACCTGGATGATAGTGTTATGTTCGTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGGCTGAATGCATCTCCATCTGCTAGACCCTGGACATATGGTCGTGTTTATTCGGCATTGTTATTGGTTTTCTTAGTTGATATATTTTGGATGAGGCTCTGTCAGGTTATATATAAGACATACCAATCCTCTTTTCTTCTGCTACTTTTCTATGAGCCTTTCAGTATTGCTTGTGAGACCCTACAGGCTATTTTGGTACATGGATTTCAATTGCTTGATATATGGCTCCATTATTCAGCATGTAACAACACTGATAGTCGAAGGTCCAAACTATTTGACAAAATAGCAGCAGGATCATTAATGGAATGGAGGGGGAGTCTTATTCGGAATTTGGGACTTTTACTAGACGTGGCAACTTTTTTTATGGCACTTGGCCATCACTTGCATATTTGGTGGCTTCATGGCTTGGCTTTCCATCTTGTAGATGCAGTGCTATTTTTAAACATACGAGCACTGCTTAGTGCAATTATAAATCGCACAAAAGCCTTTATCAGGTTGAGGATTGCTTTAGGTGCACTTCATGCAGCTCTTCCTGATGCAACAACTGTGGAGCTACAGGCATATGATGATGAGTGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAAAGCTAAACTGCAAACACCTTTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGGTTGACTGAGATATATACTTGTCCGACATGTCGAAAGCCTCTTTTTGTTGGCCGACCTGAAAATGAAGCAAGCTTCAATACACGGGAAATATCAAGTGATGAACAGCATGCACGCCAAATAAGTGCAGGGCTTGATCAGCCAAGTCCTGGTAGACATACCATGGCTGCTGGATTATATCCCAACCAGACACCGAACTCTATGGAAGGCGTTTCTTGGAGGGGTGCAGCAGGACTGGACTCAGCTTGGTTGCATTCTTGGCCAAATCATGGTGTTGATGAGGCTGGTCCATCTACTGCAATCAGATCAGTTGGATTAAGTAGAGTTCAAATGATGATGAGGCATCTTGCATCTTTTGGAGAAAACTATGCTCAGAGTGCCCTTGATGATACTGCTTGGAGCCTTTGGCCTATCAATCCTTCTCAGGCCTCGGCAAGTGCTTCACCTATTCCTCCTCCTTATGGGAGATTCCATGAAGGCTTGGGTACTCTAAATATGAGGAATCCCTCACGTTCTGCAAATGATAATCTGGCAAATATACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATGCCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTATCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1770 0.4175 MTMRFIAISAVSTILSFVGVQCGSELSFNKLKSYGLISKNLIHLKNENTSHVIELLLGSYTTIWLLANFMINAFILLNLCLKTIFFSELYPTETRKLVEHLINYVIYKGTFLPLIVPPTIYQAFLWSTWMIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDIFWMRLCQVIYKTYQSSFLLLLFYEPFSIACETLQAILVHGFQLLDIWLHYSACNNTDSRRSKLFDKIAAGSLMEWRGSLIRNLGLLLDVATFFMALGHHLHIWWLHGLAFHLVDAVLFLNIRALLSAIINRTKAFIRLRIALGALHAALPDATTVELQAYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEIYTCPTCRKPLFVGRPENEASFNTREISSDEQHARQISAGLDQPSPGRHTMAAGLYPNQTPNSMEGVSWRGAAGLDSAWLHSWPNHGVDEAGPSTAIRSVGLSRVQMMMRHLASFGENYAQSALDDTAWSLWPINPSQASASASPIPPPYGRFHEGLGTLNMRNPSRSANDNLANILAMAETVREVLPHMPDDIIFQDLQRTNSVSVTVNNLLQM 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1685 589 Pfam CUE domain 553 589 IPR003892 GO:0043130
Dere08g1685 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 389 IPR013083 -
Dere08g1685 589 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Dere08g1685 589 FunFam E3 ubiquitin protein ligase RIN2 548 588 - -
Dere08g1685 589 SMART ring_2 340 381 IPR001841 -
Dere08g1685 589 CDD RING-H2_AMFR 338 385 - -
Dere08g1685 589 Pfam Ring finger domain 338 382 IPR001841 -
Dere08g1685 589 CDD CUE_RIN3_plant 550 587 IPR035667 -
Dere08g1685 589 MobiDBLite consensus disorder prediction 398 420 - -
Dere08g1685 589 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Dere08g1685 589 ProSiteProfiles CUE domain profile. 549 589 IPR003892 GO:0043130
Dere08g1685 589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 589 - -
Dere08g1685 589 SUPERFAMILY RING/U-box 328 388 - -
Dere08g1685 589 Gene3D - 548 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1685 Dere-ChrDere08 22832881 22843804 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1685 60 423 C3H Transcription Factor Family AT3G16090 28.358 1.28e-25 108